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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEYKIVENGLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSSLINQLKSQISSKIDEVWHIHNI
NISEFIYDSPHFDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFV
SKLGGKPWILNVDPEKGSDIIIGTGATRIDNVNLFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSN
PDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPYEGTKVKLSSKRYLLTL
LQPYPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGN
RSLQTNPWFL

The query sequence (length=410) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ok9:A 430 426 1.0000 0.9535 0.9624 0.0 2bgg:A, 8pvv:A, 8qg0:A, 6t5t:A, 6tuo:A, 2w42:A, 6xu0:A, 6xu0:B, 6xup:A, 6xup:B, 1ytu:A, 1ytu:B
2 2bgg:B 394 402 0.9561 0.9949 0.9751 0.0 2w42:B
3 5awh:B 715 420 0.2024 0.1161 0.1976 3.06e-10
4 5awh:A 759 425 0.2024 0.1094 0.1953 1.40e-09 6d8a:A, 6d8a:F, 6d8f:A, 6d8f:F, 6d8p:A, 6d8p:B, 6d92:A, 6d92:F, 6d95:A, 6d95:F, 6d9k:A, 6d9k:F, 6d9l:A, 6d9l:F
5 6qzk:A 746 277 0.1439 0.0791 0.2130 1.30e-05
6 2f8s:A 704 319 0.1951 0.1136 0.2508 0.001 2f8t:A
7 1yvu:A 682 292 0.1756 0.1056 0.2466 0.002
8 1z26:A 716 422 0.2463 0.1411 0.2393 0.003 1z25:A
9 6kr6:A 713 92 0.0512 0.0295 0.2283 0.025
10 8qlp:B 452 335 0.1683 0.1527 0.2060 0.076 8qlp:F, 8qlp:J, 8qlp:N
11 1wao:1 471 89 0.0561 0.0488 0.2584 0.20 2bug:A, 8gae:E, 8gft:E, 3h60:A, 3h60:B, 3h61:A, 3h61:D, 3h62:C, 3h62:B, 3h63:A, 3h63:C, 3h64:A, 3h64:D, 3h66:A, 3h66:B, 3h67:A, 3h67:D, 3h68:A, 3h68:D, 3h69:A, 3h69:D, 5hpe:A, 4ja7:A, 4ja9:A, 1s95:A, 1s95:B, 5ui1:A, 5ui1:B, 5ui1:C, 5ui1:D, 1wao:2, 1wao:3, 1wao:4, 5wg8:A, 4zvz:A, 4zvz:B, 4zvz:C, 4zvz:D, 4zx2:A
12 2v4j:A 436 111 0.0537 0.0505 0.1982 0.22 2v4j:D
13 6cz7:A 814 97 0.0732 0.0369 0.3093 0.38 6cz7:C, 6cz8:C, 6cz8:A, 6cz9:A, 6cz9:C, 6cza:A, 6cza:C
14 7r5n:B 151 34 0.0341 0.0927 0.4118 0.40 7r5n:A
15 8jpx:B 770 255 0.1561 0.0831 0.2510 0.52 8jpx:A
16 3lkv:A 296 92 0.0634 0.0878 0.2826 0.72
17 7a6p:A 149 26 0.0268 0.0738 0.4231 1.0 7a6p:B
18 5v5z:A 488 82 0.0610 0.0512 0.3049 2.0 5fsa:A, 5fsa:B, 5tz1:A, 5tz1:B
19 8a6x:B 368 55 0.0366 0.0408 0.2727 2.4 8a3u:A, 8a52:A, 8a52:B, 8a6x:A, 8a7f:A, 8a7f:B, 8a7h:A, 8a7h:B
20 1kp3:A 439 62 0.0512 0.0478 0.3387 2.9 1k97:A, 1kp2:A
21 3gfr:D 172 67 0.0463 0.1105 0.2836 3.0 3gfq:A, 3gfq:B, 3gfq:C, 3gfq:D, 3gfr:A, 3gfr:B, 3gfr:C, 3gfs:A, 3gfs:B, 3gfs:C, 3gfs:D, 3gfs:E, 3gfs:F, 3gfs:G, 3gfs:H, 3gfs:I, 3gfs:J, 3gfs:K, 3gfs:L, 2gsw:A, 2gsw:B, 2gsw:C, 2gsw:D, 1nni:1
22 6qro:A 291 101 0.0537 0.0756 0.2178 3.5 6qro:B, 6qro:C, 6qro:D
23 5guh:A 759 120 0.0610 0.0329 0.2083 3.8
24 4twe:A 706 48 0.0488 0.0283 0.4167 4.5 4twe:B
25 4rsm:A 315 53 0.0463 0.0603 0.3585 5.5 4rsm:B, 4rsm:C, 4rsm:D
26 6p2o:A 727 71 0.0537 0.0303 0.3099 5.6 6p2o:B
27 8c05:A 305 26 0.0268 0.0361 0.4231 6.8
28 8k2m:A 559 186 0.1049 0.0769 0.2312 9.5
29 7tm7:A 802 177 0.0902 0.0461 0.2090 9.5 7tm7:B
30 3cg4:A 126 61 0.0341 0.1111 0.2295 9.5
31 5us8:A 445 66 0.0512 0.0472 0.3182 10.0 6e5y:A, 5us8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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