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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEVVVDVGGNPGVDCKGFCKYCYFKKVKDIQPLGCKYCLPFKKGCDYCTRSVKESYSGFKSLQMVLEETANKLYFTSGEV
KKFTVSGGGDLSCYPELKSLITFLSQFNTPIHLGYTSGKGFSKPDDALFYIDNGVTEVSFTVFATDPALRAEYMKDPEPE
ASIQVLRDFCTHCEVYGAIVLLPGINDGEVLEKTLCDLENMGAKGAILMRFANFQENGLILNNSPIIPGITPHTVSEFTE
IVRSSAEKHPSIRITGTPLEDPLIGSPFAIRNVPEALLKLPRVSKKATIITGQVAASRLTEIFEALGGTVNVIPVKKDIG
CLITIDDFKALDLSEVTETVFIPGRAFVHDMEIKEALRRDGVDRIVRRGPERLSVDGEMSIGMTREEVLELEVENFTELI
GQINSLGLPLE

The query sequence (length=411) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qbu:A 418 410 0.9976 0.9809 1.0000 0.0 7qbs:A, 7qbt:A, 7qbt:B, 7qbt:C, 7qbt:D, 7qbu:B, 7qbv:A, 7qbv:B, 7qbv:C, 7qbv:D
2 2v64:A 210 37 0.0316 0.0619 0.3514 0.57 6f0x:Z, 1klq:A, 2qyf:A, 2qyf:C, 2v64:F, 2v64:C
3 8imu:A 523 129 0.0852 0.0669 0.2713 1.2 8imu:B
4 7vfc:A 228 51 0.0365 0.0658 0.2941 2.6
5 7u7h:A 423 65 0.0414 0.0402 0.2615 4.1 7u7h:B
6 8b9a:X 665 40 0.0365 0.0226 0.3750 4.4 8b9b:X, 8b9c:X, 7pmk:X, 7pmn:X
7 7e5a:B 471 55 0.0438 0.0382 0.3273 5.5 7e5a:A
8 6h18:A 523 63 0.0365 0.0287 0.2381 5.9 6h0t:A, 6h0v:A, 6h19:A, 6h1a:A
9 4jn9:A 299 44 0.0438 0.0602 0.4091 6.1 4jn9:B, 4jna:A, 4jna:B, 4nte:A, 4nte:B
10 7oop:M 810 91 0.0608 0.0309 0.2747 7.5 7opc:M, 7opd:M
11 7bi7:A 279 109 0.0681 0.1004 0.2569 8.5 7bi7:B, 7jmb:A, 7jmb:B
12 6e0a:B 262 40 0.0341 0.0534 0.3500 9.2 6e0a:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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