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BioLiP
>protein
MEVNQLGLIATALFVLVPSVFLIILYVQTESQQ

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a0b:M 36 33 0.9697 0.8889 0.9697 2.29e-16 3a0b:m, 3a0h:M, 3a0h:m, 5b66:M, 7d1u:M, 7d1u:m, 7dxh:m, 8f4f:m, 6jln:M, 6jlo:M, 6jlp:M, 5mx2:m, 1s5l:M, 1s5l:m, 5tis:M, 5v2c:M
2 8wql:MD 36 33 0.6970 0.6389 0.6970 1.13e-11 8wql:ME, 8wql:M1, 8wql:m1, 8wql:mD, 8wql:mE
3 8bd3:m 57 32 0.6667 0.3860 0.6875 2.60e-10
4 5xnl:M 33 33 0.6667 0.6667 0.6667 8.61e-10 7oui:M, 7oui:m, 5xnl:m, 5xnm:M, 5xnm:m
5 7ymi:M 31 30 0.6364 0.6774 0.7000 2.74e-09 7ymi:m, 7ymm:1M, 7ymm:2M, 7ymm:3M, 7ymm:4M
6 7pi5:M 32 32 0.5758 0.5938 0.5938 1.22e-08 7pi5:m, 7pin:M, 7pin:m, 7pin:M1, 7pin:m1, 7piw:M, 7piw:m, 7piw:M1, 7piw:m1, 7pnk:M, 7pnk:m
7 8tow:M 31 29 0.6061 0.6452 0.6897 1.28e-08 8tow:m
8 6kac:M 30 30 0.5455 0.6000 0.6000 4.67e-07 6kac:m, 6kad:M, 6kad:m
9 4yuu:m2 40 33 0.4848 0.4000 0.4848 8.60e-04 4yuu:m1, 4yuu:M2
10 7y5e:ML 42 33 0.3939 0.3095 0.3939 0.022 7y5e:m6, 7y7a:M9, 7y7a:ME, 7y7a:mO, 7y7a:mZ, 7y7a:Mm
11 8wb4:M 36 25 0.3333 0.3056 0.4400 0.11 8wb4:m
12 8xlp:m 38 25 0.3030 0.2632 0.4000 0.56
13 8j5k:M 41 25 0.2727 0.2195 0.3600 0.59 8j5k:m

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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