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BioLiP
>protein
MEVNQLGLIATALFVLVPSVFLIILYVQTE

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a0b:M 36 30 0.9667 0.8056 0.9667 3.35e-14 3a0b:m, 3a0h:M, 3a0h:m, 5b66:M, 7d1u:M, 7d1u:m, 7dxh:m, 8f4f:m, 6jln:M, 6jlo:M, 6jlp:M, 5mx2:m, 1s5l:M, 1s5l:m, 5tis:M, 5v2c:M
2 8wql:MD 36 30 0.7333 0.6111 0.7333 2.22e-10 8wql:ME, 8wql:M1, 8wql:m1, 8wql:mD, 8wql:mE
3 8bd3:m 57 29 0.6667 0.3509 0.6897 1.27e-08
4 8tow:M 31 29 0.6667 0.6452 0.6897 1.34e-08 8tow:m
5 5xnl:M 33 29 0.6667 0.6061 0.6897 2.26e-08 7oui:M, 7oui:m, 5xnl:m, 5xnm:M, 5xnm:m
6 7ymi:M 31 27 0.6667 0.6452 0.7407 3.72e-08 7ymi:m, 7ymm:1M, 7ymm:2M, 7ymm:3M, 7ymm:4M
7 7pi5:M 32 28 0.6333 0.5938 0.6786 6.91e-08 7pi5:m, 7pin:M, 7pin:m, 7pin:M1, 7pin:m1, 7piw:M, 7piw:m, 7piw:M1, 7piw:m1, 7pnk:M, 7pnk:m
8 6kac:M 30 28 0.5667 0.5667 0.6071 3.17e-06 6kac:m, 6kad:M, 6kad:m
9 4yuu:m2 40 30 0.5333 0.4000 0.5333 0.004 4yuu:m1, 4yuu:M2
10 7y5e:ML 42 30 0.4333 0.3095 0.4333 0.18 7y5e:m6, 7y7a:M9, 7y7a:ME, 7y7a:mO, 7y7a:mZ, 7y7a:Mm
11 8wb4:M 36 22 0.3333 0.2778 0.4545 2.5 8wb4:m
12 8j5k:M 41 22 0.3000 0.2195 0.4091 3.8 8j5k:m
13 8xlp:m 38 22 0.3333 0.2632 0.4545 3.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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