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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MEVEKEFITDEAKELLSKDKLIQQAYNEVKTSICSPIWPATSKTFTINNTEKNCNGVVPIKELCYTLLEDTYNWYREKPL
DILKLEKKKGGPIDVYKEFIENSELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAYYLTDRVTNFE
ELEPYFELTEGQPFIFIGFNAEAYNSNVPLIPKGSDGMSKRSIKKW

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bam:B 210 206 1.0000 0.9810 1.0000 4.65e-153 2bam:A, 3bam:A, 3bam:B, 1bhm:A, 1bhm:B, 1esg:A
2 3odh:A 194 185 0.3252 0.3454 0.3622 1.68e-29 3odh:B, 3odh:E, 3odh:F
3 2xn2:A 729 125 0.1456 0.0412 0.2400 0.66
4 6tug:B 415 78 0.0825 0.0410 0.2179 1.5 6tug:A, 6tug:C, 6tug:D, 6tug:E, 6tug:F, 6tug:G, 6tug:H
5 6riw:A 923 46 0.0777 0.0173 0.3478 3.9
6 6fg5:A 334 43 0.0631 0.0389 0.3023 6.1 6ezu:A, 6ezu:B, 6fg5:B
7 7rxb:A 548 48 0.0777 0.0292 0.3333 6.6 7rxb:B
8 7rxg:B 650 48 0.0777 0.0246 0.3333 6.8 7rxg:A, 7rxh:A
9 7rx3:B 591 48 0.0777 0.0271 0.3333 6.9 7rx3:A, 7rxa:A, 7rxa:B
10 7rx2:B 615 48 0.0777 0.0260 0.3333 7.4 6e0h:B, 6e0h:A, 6e1o:B, 6e1o:A, 7rwj:B, 7rwj:A, 7rx2:A
11 7rhq:A 974 43 0.0631 0.0133 0.3023 9.9 7rhr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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