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BioLiP
>protein
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA
VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3q86:A 149 149 1.0000 1.0000 1.0000 3.76e-109 3q86:B, 3q89:B, 3q89:E, 3q8u:A, 3q8u:B, 3q8u:C, 3q8u:D, 3q8u:E, 3q8u:F, 3q8v:A, 3q8v:B, 3q8v:D, 3q8y:A, 3q8y:B, 3q8y:C, 3q8y:D, 3q8y:E, 3q8y:F, 3q8y:G, 3q8y:H
2 5u2i:B 151 148 0.5369 0.5298 0.5405 1.12e-60 5u2i:D
3 2az1:A 155 150 0.5369 0.5161 0.5333 2.16e-58 2az1:C, 2az1:D, 2az3:A, 2az3:B, 2az3:F, 2az3:C, 2az3:D, 2az3:E, 2az3:G, 2az3:H, 2az3:I
4 8qvz:C 155 148 0.5369 0.5161 0.5405 1.76e-57 8qvz:A, 8qvz:B, 8qvz:D, 8qvz:E, 8qvz:F, 8qw0:A, 8qw0:B, 8qw0:C, 8qw0:D, 8qw0:E, 8qw0:F, 8qw0:G, 8qw0:H, 8qw0:I, 8qw0:J, 8qw0:K, 8qw0:L, 8qw1:A, 8qw1:B, 8qw1:C, 8qw1:D, 8qw1:E, 8qw1:F, 8qw2:A, 8qw2:B, 8qw2:C, 8qw2:D, 8qw2:E, 8qw2:F, 8qw3:A, 8qw3:B, 8qw3:C, 8qw3:D, 8qw3:E, 8qw3:F, 1zs6:A, 1zs6:B, 1zs6:D
5 1s59:A 153 149 0.5168 0.5033 0.5168 1.36e-55 1s59:C
6 8oov:B 157 149 0.5168 0.4904 0.5168 3.17e-55 1be4:A, 1be4:B, 1be4:C, 1bhn:A, 1bhn:B, 1bhn:C, 1bhn:D, 1bhn:E, 1bhn:F, 4eno:A, 4eno:B, 2hvd:A, 2hvd:B, 2hvd:C, 2hve:A, 2hve:B, 2hve:C, 8oov:A, 8oov:C, 1ucn:A, 1ucn:B, 1ucn:C, 5ui4:A, 5ui4:B, 5ui4:C, 5ui4:D, 5ui4:E, 5ui4:F, 7zl8:A, 7zl8:B, 7zl8:C, 7zl8:D, 7zl8:E, 7zl8:F, 7zl8:G, 7zl8:H, 7zl8:I, 7zl8:J, 7zl8:K, 7zl8:L, 7zlw:A, 7zlw:B, 7zlw:C, 7zlw:D, 7zlw:F, 7ztk:A, 7ztk:B, 7ztk:C, 7ztk:D, 7ztk:E, 7ztk:F
7 5bxi:B 153 148 0.5101 0.4967 0.5135 2.14e-54 5bxi:A, 5bxi:C, 5bxi:I
8 4cp5:A 151 148 0.5570 0.5497 0.5608 3.32e-54 1b4s:A, 1b4s:B, 1b4s:C, 1b99:A, 1b99:C, 1b99:D, 1b99:E, 2bef:A, 2bef:B, 2bef:C, 1bux:A, 1bux:B, 1bux:C, 4cp5:B, 4cp5:C, 4cp5:D, 4cp5:E, 4cp5:F, 1f3f:A, 1f3f:B, 1f3f:C, 1f6t:A, 1f6t:B, 1f6t:C, 3fkb:A, 3fkb:B, 3fkb:C, 3fkb:D, 3fkb:E, 3fkb:F, 1hiy:A, 1hiy:B, 1hiy:C, 1kdn:A, 1kdn:B, 1kdn:C, 1lwx:A, 1lwx:B, 1lwx:C, 1mn7:A, 1mn7:B, 1mn9:A, 1mn9:B, 1mn9:C, 1ndc:A, 1ndp:A, 1ndp:B, 1pae:X, 1s5z:A
9 2dya:B 155 152 0.5705 0.5484 0.5592 3.93e-54 2dxd:A, 2dxd:B, 2dxe:A, 2dxf:A, 2dy9:A, 2dya:A
10 3ngs:A 151 148 0.4966 0.4901 0.5000 7.06e-54 4kpc:A, 4kpc:B, 3ngs:C, 3ngt:A, 3ngt:B, 3ngt:C, 3ngt:D, 3ngt:E, 3ngt:F, 3ngt:G, 3ngt:H, 3ngt:I, 3ngt:J, 3ngt:K, 3ngt:M, 3ngt:N, 3ngu:A, 3ngu:B
11 6xpw:C 158 148 0.5034 0.4747 0.5068 4.02e-53 6xp7:A, 6xp7:B, 6xp7:C, 6xps:A, 6xps:B, 6xps:C, 6xpt:A, 6xpt:B, 6xpt:C, 6xpt:E, 6xpt:G, 6xpt:H, 6xpu:A, 6xpu:B, 6xpu:C, 6xpv:A, 6xpv:B, 6xpv:C, 6xpv:E, 6xpv:G, 6xpv:H, 6xpw:A, 6xpw:B, 6xpw:E, 6xpw:G, 6xpw:H
12 1wkk:A 137 136 0.4966 0.5401 0.5441 5.69e-53 1wkl:A, 1wkl:B
13 5kk8:A 149 148 0.4966 0.4966 0.5000 1.27e-52 5kk8:B
14 4uof:A 151 148 0.4966 0.4901 0.5000 1.65e-52 4uof:B, 4uof:C, 4uog:A, 4uog:B, 4uog:C, 4uoh:B, 4uoh:C
15 7kpf:A 152 149 0.4899 0.4803 0.4899 1.94e-52 3bbb:B, 3bbb:C, 3bbb:E, 3bbb:F, 3bbf:A, 3bbf:B, 3bbf:C, 3bbf:D, 3bbf:E, 3bbf:F, 7kpf:B, 7kpf:C, 1nue:A, 1nue:B, 1nue:C, 1nue:D, 1nue:E, 1nue:F, 8pie:A, 8pie:B, 8pie:C, 8pie:D, 8pie:E, 8pie:F, 8pyw:A, 8pyw:B, 8pyw:C, 8pyw:D, 8pyw:E, 8pyw:F
16 4fkx:A 153 148 0.5101 0.4967 0.5135 2.46e-52 4f4a:A, 4f4a:B, 4f4a:C, 4fkx:B, 4fkx:C, 4fky:A, 4fky:B, 4fky:C
17 4s0m:D 143 137 0.4497 0.4685 0.4891 1.15e-46 5yol:E, 5yol:H
18 1nhk:R 144 139 0.4430 0.4583 0.4748 6.26e-45 1nhk:L, 1nlk:R, 1nlk:L
19 7kpf:F 135 149 0.4631 0.5111 0.4631 6.52e-45
20 3ejm:A 134 134 0.3960 0.4403 0.4403 1.21e-39 3b6b:A, 3b6b:B, 3b6b:C, 3b6b:D, 3b6b:E, 3b6b:F, 2b8q:A, 2b8q:B, 2b8q:C, 2b8q:D, 2b8q:E, 2b8q:F, 3ddi:A, 3ddi:B, 3dkd:A, 3dkd:B, 3ee3:A, 3ee3:B, 3ee3:C, 3ee3:D, 3ee3:E, 3ee3:F, 3eic:A, 3eic:B, 3eic:C, 3eic:D, 3eic:E, 3eic:F, 3ejm:B, 3em1:A, 3em1:B, 3emt:A, 3emt:B, 3ena:A, 3ena:B, 3etm:A, 3etm:B, 3evm:A, 3evm:B, 3evo:A, 3evo:B, 3evw:A, 3evw:B, 3evw:C, 3evw:D, 3evw:E, 3evw:F, 3fbb:A, 3fbb:B, 3fbb:C, 3fbb:D, 3fbb:E, 3fbb:F, 3fbc:A, 3fbc:B, 3fbc:C, 3fbc:D, 3fbc:E, 3fbc:F, 3fbe:A, 3fbe:B, 3fbe:C, 3fbe:D, 3fbe:E, 3fbe:F, 3fbf:A, 3fbf:B, 3fbf:C, 3fbf:D, 3fbf:E, 3fbf:F, 3fc9:A, 3fc9:B, 3fc9:C, 3fc9:D, 3fc9:E, 3fc9:F, 3fcw:A, 3fcw:B, 3fcw:C, 3fcw:D, 3fcw:E, 3fcw:F, 3g2x:A, 3g2x:B, 3g2x:C, 3g2x:D, 3g2x:E, 3g2x:F, 3gp9:A, 3gp9:B, 3gp9:C, 3gp9:D, 3gp9:E, 3gp9:F, 3gpa:A, 3gpa:C, 3gpa:E, 3gpa:B, 3gpa:D, 3gpa:F
21 4ek2:A 142 138 0.3893 0.4085 0.4203 8.08e-39 4hr2:A, 4hr2:B
22 4dz6:A 168 155 0.4228 0.3750 0.4065 6.34e-36 4dz6:B, 4dz6:C, 4dz6:D, 4dz6:E, 4dz6:F
23 4iw9:B 215 43 0.1141 0.0791 0.3953 2.2 4iw9:A, 4iw9:C
24 6jv0:A 273 62 0.1074 0.0586 0.2581 2.5 6juz:A, 6jv1:A
25 4gaa:A 606 70 0.1208 0.0297 0.2571 2.9 4gaa:B
26 2ib8:D 393 44 0.1007 0.0382 0.3409 3.6 2f2s:A, 2f2s:B, 2f2s:C, 2f2s:D, 2ib8:A, 2ib8:B, 2ib8:C, 2ib9:A, 2ib9:B, 2ib9:C, 2ib9:D, 2ibu:A, 2ibu:B, 2ibu:C, 2ibu:D, 2ibw:A, 2ibw:B, 2ibw:C, 2ibw:D, 2iby:A, 2iby:B, 2iby:C, 2iby:D
27 8f5b:A 1924 71 0.1477 0.0114 0.3099 6.9 7lkz:A
28 7e7o:A 2003 71 0.1477 0.0110 0.3099 7.0 7lkp:A
29 7e7q:A 1958 27 0.0940 0.0072 0.5185 7.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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