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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPALRMKWMMAMKYPITADKRIMEMIPERNEQGQTLWSK
TNDAGSDRVMVSPLAVTWWNRNGPTTSAVHYPKIYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQ
DVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKISPLMVAYMLERELVRKTRFLPVAGGTSSVYIEVLHLTQGTCW
EQMYTPGGE

The query sequence (length=249) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bek:C 737 249 0.9839 0.3324 0.9839 0.0 7as0:A, 7as1:A, 7as2:A, 7as3:A, 5buh:A, 4cb4:A, 4cb5:A, 4cb6:A, 4cb6:B, 4cb7:B, 5eg7:A, 4eqk:A, 4es5:A, 4es5:B, 4es5:C, 4es5:D, 6euv:A, 6euv:I, 6euv:C, 6euv:F, 6euw:A, 6euy:A, 6euy:B, 6euy:C, 5f79:A, 5fmm:A, 5fmq:A, 8h69:C, 5jun:A, 5jur:A, 4nce:A, 4ncm:A, 7nha:C, 7nhc:C, 7nhx:C, 7ni0:C, 7nik:C, 7nil:C, 7nir:C, 7nis:C, 7nj3:C, 7nj4:C, 7nj5:C, 7nj7:C, 7nk1:C, 7nk2:C, 7nk4:C, 7nk6:C, 7nk8:C, 7nka:C, 7nkc:C, 7nki:C, 7nkr:C, 4p1u:A, 8pm0:C, 8pnp:C, 8pnq:C, 7qtl:C, 7r0e:C, 8r3k:C, 8r3l:C, 8r60:C, 8r65:C, 6rr7:C, 6s5v:AAAA, 6s5v:ABAA, 2vqz:A, 2vqz:B, 2vqz:D, 2vqz:E, 2vqz:F, 3wi1:A, 5wl0:A, 7xme:A, 7xme:B, 7xme:C, 7xme:D, 4yd0:A
2 6evj:C 748 249 0.7671 0.2553 0.7671 1.85e-146 6evj:F, 6evk:C, 9f2r:C, 9f37:C, 6fhh:C, 6fhi:C, 5m3h:C, 6szu:C, 6szv:C, 6t0n:C, 6t0r:C, 6t0s:C, 6t0u:C, 6t0v:C, 6tw1:C, 4wsb:C
3 7z42:C 718 248 0.3936 0.1365 0.3952 6.05e-58
4 6qcs:C 742 248 0.3936 0.1321 0.3952 7.62e-58 8bdr:C, 8be0:C, 8bf5:C, 5efa:A, 5efc:A, 6f5o:C, 5m3j:C, 5msg:C, 4or4:A, 4or4:B, 4or6:A, 4or6:B, 4oro:A, 4oro:B, 4oro:C, 4oro:D, 4q46:A, 4q46:B, 6qct:C, 6qcv:C, 6qcw:C, 6qcx:C, 7r1f:C, 6t0w:C, 4wrt:C, 4wsa:C, 7z42:F, 7z43:CCC
5 6t2c:C 116 94 0.2691 0.5776 0.7128 1.18e-48
6 6t2c:C 116 27 0.0803 0.1724 0.7407 6.10e-08
7 6kuk:C 249 240 0.3213 0.3213 0.3333 4.75e-36 6kup:C
8 6xzd:CP1 772 248 0.3133 0.1010 0.3145 3.99e-33
9 8z97:C 552 142 0.1205 0.0543 0.2113 0.35
10 6rm3:LZ0 125 87 0.1084 0.2160 0.3103 0.40
11 8xd5:A 419 94 0.0763 0.0453 0.2021 0.44 8hho:A, 8hiq:A, 8hiz:A, 8hj9:A, 8xco:A, 8xcp:A, 8xcq:A, 8xcr:A, 8xcs:A, 8xct:A, 8xcu:A, 8xcv:A, 8xcw:A, 8xcx:A, 8xcy:A, 8xcz:A, 8xd0:A, 8xd1:A, 8xd2:A, 8xd3:A, 8xd4:A, 8xd6:A, 8znb:A, 8znc:A, 8znd:A, 8zne:A, 8zng:A
12 8z9h:C 748 142 0.1205 0.0401 0.2113 0.52 8z90:C, 8z9r:C
13 8rwl:A 312 33 0.0683 0.0545 0.5152 0.69 9end:A, 9end:B, 8rs5:A, 8rs5:B, 8rwl:B
14 8z8x:C 400 142 0.1205 0.0750 0.2113 0.73
15 1bbu:A 486 80 0.0723 0.0370 0.2250 3.5
16 2gcd:A 309 69 0.0763 0.0615 0.2754 4.4 2gcd:B, 1u5q:A, 1u5q:B, 1u5r:A, 1u5r:B
17 6se9:A 989 78 0.0723 0.0182 0.2308 5.9 6sea:A, 6seb:A, 6sec:A, 6sed:A, 6zjq:A, 6zjr:A, 6zjs:A, 6zjt:A, 6zju:A, 6zjw:A, 6zjx:A
18 7wtt:q 235 59 0.0522 0.0553 0.2203 9.3 6g4w:q, 7wts:q, 7wtu:q, 7wtv:q, 7wtw:q
19 3t8i:A 306 50 0.0602 0.0490 0.3000 9.4 3t8i:B, 3t8i:C, 3t8i:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218