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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEPVIIGALILDVHAKPSTTPISGTTVPGQVLFAPGGVARNVADCIFKLGITPFMIGTLGLDGPANVLLKEWKLSMKGIL
RREDISTPIVSLVYDTNGEVAAGVAGVDAVENFLTPEWIQRFEYNISSARLLMVDANLSSLALEASCKLAAESSVPVWFE
PVSVTKSQRIASIAKYVTIVSPNQDELIAMANALCAKNLFHPFRENKLSIEDMFRALKPAILVLLKNGVKVVIVTLGSNG
ALLCSKGNPKKALNIDRVQSVCSPSLFAMHFPTIPAKVKKLTGAGDCLVGGTVASLSDGLDLIQSLAVGIASAKAAVESD
DNVPPEFKLDLISGDAELVYNGAKMLM

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c1y:A 356 359 0.9798 0.9551 0.9471 0.0 7c1y:B, 7c1z:A, 7c1z:B
2 7w93:A 307 325 0.2104 0.2378 0.2246 1.07e-12 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
3 3kzh:A 316 339 0.2075 0.2278 0.2124 1.18e-09 3kzh:B
4 5c41:A 317 293 0.2133 0.2334 0.2526 4.03e-09 5byf:A, 5byf:B, 5c3y:A, 5c3y:B, 5c3y:C, 5c3y:D, 5c3y:E, 5c3y:F, 5c3y:G, 5c3y:H, 5c3y:I, 5c3y:J, 5c3y:K, 5c3y:L, 5c3z:A, 5c3z:B, 5c40:A, 5c40:B, 5c41:B, 5c41:C, 5c41:D, 2fv7:A, 2fv7:B, 6wjz:A, 6wjz:B, 6wk0:A, 6wk0:B, 6wk0:C, 6wk0:D
5 6a8a:A 327 315 0.2104 0.2232 0.2317 3.18e-05 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B
6 3loo:B 341 312 0.2046 0.2082 0.2276 1.49e-04 3loo:A, 3loo:C
7 8cqx:A 300 309 0.2075 0.2400 0.2330 0.002 8cqx:B, 8cqx:C, 8cqx:D, 6znx:A, 6znx:B, 6znx:D
8 1tz3:A 299 279 0.1816 0.2107 0.2258 0.003 1tz6:A, 1tz6:B
9 3ie7:A 309 148 0.1037 0.1165 0.2432 0.012 3jul:A
10 6ak7:A 257 39 0.0461 0.0623 0.4103 0.013 4da1:A, 2iq1:A
11 3n1c:A 309 140 0.1095 0.1230 0.2714 0.017 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
12 1gqt:B 307 269 0.1960 0.2215 0.2528 0.027 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
13 6ils:B 313 333 0.2104 0.2332 0.2192 0.033 6ils:A, 6ilt:A, 6ilt:B
14 7ag6:A 302 283 0.1902 0.2185 0.2332 0.039 7ag6:B, 7agh:C, 7agh:D, 7agh:A, 7agh:B, 7agk:A, 7agk:B, 7agk:C
15 3iq0:B 308 98 0.0836 0.0942 0.2959 0.047 3iq0:A
16 2c49:A 299 316 0.2075 0.2408 0.2278 0.089 2c49:B
17 2var:A 311 119 0.1066 0.1190 0.3109 0.096 2var:B, 2var:C
18 4n09:A 345 160 0.1037 0.1043 0.2250 0.20 4n09:B, 4n09:C, 4n09:D, 3otx:A, 3otx:B, 2xtb:A
19 2f02:A 319 327 0.2161 0.2351 0.2294 0.79 2f02:B
20 6xk2:A 320 89 0.0749 0.0813 0.2921 0.81 6xk2:B, 6xk2:C, 6xk2:D
21 6znx:C 265 37 0.0346 0.0453 0.3243 1.9
22 3ikh:A 286 68 0.0576 0.0699 0.2941 1.9 3i3y:D, 3ikh:B, 3ikh:C, 3ikh:D
23 3in1:A 312 332 0.2075 0.2308 0.2169 2.3 3in1:B
24 8g1n:A 193 63 0.0461 0.0829 0.2540 2.3 8g1n:B
25 2a9y:A 351 42 0.0432 0.0427 0.3571 2.8 2a9z:A, 2aa0:A, 2ab8:A, 2abs:A, 1dgm:A, 1lii:A, 1lij:A, 1lik:A
26 3fcx:B 275 32 0.0317 0.0400 0.3438 4.0 3fcx:A
27 3ih0:A 304 59 0.0548 0.0625 0.3220 4.1 3gbu:A, 3gbu:B, 3gbu:C, 3gbu:D
28 2jg1:A 318 119 0.0865 0.0943 0.2521 5.6 2jg1:B, 2jg1:C, 2jg1:D, 2jgv:B, 2jgv:D
29 5ygg:A 310 99 0.0692 0.0774 0.2424 6.3 5eyn:A, 5f0z:A, 5f11:A
30 4maf:B 404 73 0.0605 0.0520 0.2877 7.3 4maf:A, 4maf:C, 4maf:D, 4maf:E, 4maf:F, 4maf:G, 4maf:H
31 8ome:A 298 183 0.1182 0.1376 0.2240 7.7 2hw1:A, 8ome:D, 8ome:B, 8ome:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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