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BioLiP
>protein
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFDS

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dvr:A 147 147 1.0000 1.0000 1.0000 2.21e-107 7dvt:A, 7dvu:A, 7dvv:A, 7dvv:B
2 5ffz:A 140 117 0.1769 0.1857 0.2222 4.01e-06 5fb2:A, 4lll:C, 4lll:D, 4lll:A, 4lll:B, 4lll:I, 4lll:J, 4lln:A, 4lln:B, 4lln:C, 4lln:D, 4lln:I, 4lln:J
3 3zpl:E 160 116 0.1633 0.1500 0.2069 0.001 3zpl:A, 3zpl:B, 3zpl:F
4 7kua:A 149 77 0.1156 0.1141 0.2208 0.002
5 3q5f:A 141 69 0.1429 0.1489 0.3043 0.004 3q5f:B
6 1z9c:C 138 73 0.1497 0.1594 0.3014 0.060 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
7 6q2b:A 150 85 0.1769 0.1733 0.3059 0.068 6q2b:B
8 6jbx:A 146 78 0.1361 0.1370 0.2564 0.13 6jbx:B
9 4aij:B 142 69 0.1293 0.1338 0.2754 0.18 4aij:A, 4aik:A
10 5hli:A 146 59 0.1156 0.1164 0.2881 0.73 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
11 7kfq:A 141 50 0.0816 0.0851 0.2400 1.6 7kfo:A, 7kh3:A, 7kig:A, 7kjq:A, 7kk0:A, 7kkc:A, 7kki:A
12 8pj1:s 159 91 0.1837 0.1698 0.2967 2.1 7a09:4, 8oz0:U, 8ppl:Is, 7qp6:s, 6ybv:s, 6zmw:s, 6zp4:4
13 3f8f:A 114 41 0.0816 0.1053 0.2927 3.7 6do0:A, 6do0:B, 3f8c:A, 3f8f:B, 6fuu:A, 7q34:A, 7q34:B, 7q34:C, 7qz6:A, 7qz6:B, 7qz7:A, 7qz7:B, 7qz8:A, 7qz8:B, 6r1l:A, 6vwe:A, 6vwe:B, 7xuq:A, 8zf1:A
14 4em0:B 150 75 0.1429 0.1400 0.2800 5.0
15 3hrd:A 420 49 0.1020 0.0357 0.3061 7.3 3hrd:E
16 8wa1:c 1176 78 0.1361 0.0170 0.2564 7.7
17 8pj9:A 1051 61 0.1361 0.0190 0.3279 7.8
18 3ojl:A 418 52 0.1020 0.0359 0.2885 8.9 3ojl:B, 3ojo:A, 3ojo:B
19 3tl1:A 158 46 0.0816 0.0759 0.2609 9.9 3tl1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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