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BioLiP
>protein
MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQNDGLLK
NVWSYS

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bqd:a 87 86 1.0000 0.9885 1.0000 3.80e-60 8bn3:D1, 8bqx:a, 8c83:a, 8cah:a, 8ccs:x, 8cf5:x, 8cku:x, 8cmj:x, 5dat:d1, 5dge:d1, 5dgv:d1, 6eml:a, 8eub:BV, 8evp:BV, 8evq:BV, 8evr:BV, 8evs:BV, 8evt:BV, 8ewb:BV, 8ewc:BV, 6fai:V, 6fyy:V, 6gq1:AL, 6gqv:AL, 6gsm:V, 6gsn:V, 8i7j:V, 5it7:V, 5it9:V, 3j77:21, 3j78:21, 3j80:V, 5juu:SB, 8k2d:SV, 8k82:SV, 5m1j:V2, 7mpi:BV, 7mpj:BV, 7n8b:BV, 5ndv:d1, 7nrd:Sa, 5obm:d1, 7osa:eS21, 7osm:eS21, 6q8y:a, 6rbd:V, 6rbe:V, 8rw1:V, 6s47:BW, 8s8d:V, 8s8e:V, 8s8f:V, 8s8i:V, 6snt:V, 6sv4:a, 6t4q:SV, 6t7t:SV, 6tnu:a, 4u3n:D1, 4u4n:D1, 4u4o:D1, 4u4y:D1, 4u50:d1, 4u53:D1, 4v6i:AT, 4v8y:AV, 4v8z:AV, 4v92:BV, 6xiq:AL, 6xir:AL, 6z6j:SV, 6z6k:SV, 7zrs:AV, 7zux:DV
2 8c3a:X 87 86 0.8837 0.8736 0.8837 5.17e-53 8c3a:DI, 8cq7:X, 8cq7:DI, 8cqw:X, 8cqw:DI, 8cre:X, 8cre:DI, 8oeq:X, 8oeq:DI, 7pzy:W, 7q08:W, 7q0f:W, 7q0p:W, 7q0r:W, 8q5i:W
3 7syl:W 83 79 0.5349 0.5542 0.5823 4.15e-30 6gz3:BV, 6olz:BV, 6om0:SV, 6om7:SV, 7oyb:V2, 7tor:AS21, 7wtw:V, 7wtz:V
4 8auv:G 83 74 0.4767 0.4940 0.5541 7.76e-30 8b2l:G1
5 4v3p:ST 82 74 0.5233 0.5488 0.6081 1.17e-29
6 5xxu:V 80 79 0.5581 0.6000 0.6076 1.81e-29
7 8r6f:V 81 74 0.5233 0.5556 0.6081 7.74e-28 8ip8:cb, 8ip9:cb, 8ipa:cb
8 6xu8:AV 82 80 0.5581 0.5854 0.6000 1.07e-27
9 7qix:L 82 74 0.4651 0.4878 0.5405 1.83e-27 7qiz:BA
10 6az1:Y 88 80 0.4302 0.4205 0.4625 2.12e-22 8rxh:SY, 8rxx:SY
11 8ova:AR 89 78 0.4186 0.4045 0.4615 2.02e-20
12 7ase:g 83 78 0.3953 0.4096 0.4359 3.50e-20
13 3j7a:Z 72 69 0.4302 0.5139 0.5362 1.56e-19 3jbn:Z, 3jbp:Z, 6okk:Z, 8tpu:SZ
14 4bts:AZ 97 76 0.3605 0.3196 0.4079 4.72e-14 4bts:BZ, 4bts:CZ, 4bts:DZ, 4v5o:AZ, 4v5o:BZ
15 7t5a:A 230 69 0.2442 0.0913 0.3043 0.20 7t50:A, 7t50:B, 7t51:A, 7t51:B, 7t5a:B
16 1md9:A 536 47 0.1744 0.0280 0.3191 1.7 1mdb:A
17 1ea0:A 1452 60 0.2326 0.0138 0.3333 2.1 1ea0:B
18 6s6t:A 1472 60 0.2326 0.0136 0.3333 2.3 6s6s:A, 6s6s:B, 6s6s:C, 6s6s:D, 6s6t:B, 6s6t:C, 6s6t:D, 6s6u:A, 6s6u:B, 6s6u:C, 6s6u:D, 6s6u:E, 6s6u:F, 6s6x:A, 6s6x:B, 6s6x:C, 6s6x:D, 6s6x:E, 6s6x:F, 2vdc:A, 2vdc:B, 2vdc:C, 2vdc:D, 2vdc:E, 2vdc:F
19 5xxz:B 1310 20 0.1279 0.0084 0.5500 2.3
20 6vjb:A 1346 20 0.1279 0.0082 0.5500 2.4
21 5xya:A 1358 20 0.1279 0.0081 0.5500 2.6 5xxz:A
22 7edd:A 1394 20 0.1279 0.0079 0.5500 2.6 5xyr:A
23 3rg2:C 613 43 0.1395 0.0196 0.2791 2.6 6iyk:A, 6iyk:B, 6iyl:A, 6iyl:B, 4iz6:A, 4iz6:B, 8k5s:A, 8k5s:B, 8k5t:A, 8k5t:B, 3rg2:A, 3rg2:B, 3rg2:H, 3rg2:D, 3rg2:E, 3rg2:F, 3rg2:I, 3rg2:G, 3rg2:J
24 5f5b:A 182 16 0.1279 0.0604 0.6875 3.1 8ab5:A, 8ab5:B, 5f5g:A, 5f5j:A, 5f5k:A, 4h1d:A, 5mt6:A, 5mt7:A, 5mt8:A, 5mtf:A, 6pj4:A, 6pj5:A, 6pj7:A, 6pj8:A, 6pj9:A, 6pja:A, 6pjp:A, 6pjq:A, 6pjr:A, 6pju:A, 4qnz:A, 4qo0:A, 4qo2:A, 3txt:A, 3ubb:A, 6vj8:A, 6vj9:A, 2xow:A, 6xro:A, 6xrp:A, 3zeb:A, 3zmh:A, 3zmi:A, 3zmj:A, 3zot:A
25 1u8x:X 436 26 0.1279 0.0252 0.4231 5.2
26 1atg:A 231 22 0.1163 0.0433 0.4545 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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