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BioLiP
>protein
MEKSVSVILLAGGSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGKERQDSV
YSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVTLWEMQTPQVIKPELLKK
GFELVKSEGLEVTDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yc3:A 219 219 0.9858 0.9543 0.9543 4.24e-147 5mrm:A, 5mro:A, 5mrp:A, 4nak:A, 4nal:A, 4nan:A, 1w77:A, 2yc5:A, 2ycm:A
2 5hs2:A 226 203 0.3349 0.3142 0.3498 1.75e-32
3 4zdq:A 230 220 0.3255 0.3000 0.3136 6.71e-25 4zdq:D
4 1i52:A 225 212 0.3302 0.3111 0.3302 1.49e-21 1h3m:A, 1h3m:B, 1ini:A
5 2xwl:B 222 209 0.2877 0.2748 0.2919 3.84e-16 2xwl:A, 2xwm:A, 2xwm:B
6 1vpa:A 221 220 0.3019 0.2896 0.2909 5.40e-14 1vpa:B
7 6xhq:A 237 228 0.2594 0.2321 0.2412 2.23e-10 6xhq:B, 6xhs:B, 6xhs:E, 6xht:A, 6xht:B, 6xht:E, 6xht:F
8 2vsi:B 227 224 0.2736 0.2555 0.2589 5.97e-10 2vsi:A
9 4cvh:A 391 233 0.2736 0.1483 0.2489 2.61e-09
10 2xwn:B 227 154 0.2406 0.2247 0.3312 9.41e-09 3okr:D, 3q7u:A, 3q7u:B, 3q80:A, 3q80:B, 2xwn:A
11 1w55:A 369 209 0.2547 0.1463 0.2584 2.25e-07 1w57:A
12 3qtm:A 329 61 0.1038 0.0669 0.3607 0.51 3qtm:B
13 2aiz:P 134 44 0.0660 0.1045 0.3182 1.5
14 7s04:A 396 44 0.0708 0.0379 0.3409 1.6
15 1j6w:A 161 127 0.1415 0.1863 0.2362 2.8 1j6w:B, 1joe:A, 1joe:B, 1joe:C, 1joe:D
16 1guz:A 305 52 0.0802 0.0557 0.3269 5.1 1guz:B, 1guz:C, 1guz:D
17 8adg:A 787 144 0.1651 0.0445 0.2431 5.2 8adi:A, 8bvq:A, 6lyq:A, 6lyr:A, 7nre:A, 7nrf:A, 7nri:A, 7p1c:A, 8pzu:A, 8pzv:A, 2qdf:A, 6qgw:A, 6qgx:A, 6qgy:C, 7r1w:A, 7tsz:A, 7tt0:A, 7tt1:A, 7tt2:A, 7tt3:A, 7tt4:A, 7ttc:A
18 8ow6:A 149 64 0.0896 0.1275 0.2969 6.2 8ow6:C
19 8c3a:H 206 29 0.0660 0.0680 0.4828 8.2 8c3a:CS, 8cq7:H, 8cq7:CS, 8cqw:H, 8cqw:CS, 8cre:H, 8cre:CS, 8oeq:H, 8oeq:CS, 7pzy:G, 7q08:G, 7q0f:G, 7q0p:G, 7q0r:G, 8q5i:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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