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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEIKETYDFSSIVDLWNKNIGTVYPMNLELFKQNYINDRQRKKIMGAFNGEILIGFVIYKQWTYKSGSLKPNHKIGYINS
IIVDINFRHQGIGTKLLDAAEEELINSGVKILRCGSDTYHFFPGIPLECLPSEEFFLVRGYKMQDYFYDLIGDVSKVDFK
KPSIKDGFKVNVMKPEDRKGLFEFLEKSFSGRWLEEFIEFFQVGMKERDIVLIKYKTSVIGFSHIYDNKSSFIGPPIYWK
ALLGHNYGGLGPIGIDKTYRKQGLGRLLLYESLQILKKREVKKMVIDWTEKDIINFYGRFNFMPWKAYRKATKEVKD

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kf2:A 317 317 1.0000 1.0000 1.0000 0.0 5kf1:A, 5kf1:B, 5kf8:A, 5kf9:A, 5kga:A, 5kga:B, 5kgh:A, 5kgh:B, 5kgj:A, 5kgp:A, 5kgp:B
2 4zm6:A 844 324 0.2587 0.0972 0.2531 9.58e-23 4zm6:B
3 4rs2:B 183 118 0.0915 0.1585 0.2458 0.003 4rs2:A
4 1ib1:E 179 61 0.0536 0.0950 0.2787 0.003 1cjw:A, 1ib1:F, 1ib1:G, 1ib1:H, 1kuv:A, 1kux:A, 1kuy:A, 1l0c:A
5 7l1k:A 149 64 0.0662 0.1409 0.3281 0.011
6 7l1k:A 149 62 0.0662 0.1409 0.3387 0.024
7 2q0y:A 153 57 0.0599 0.1242 0.3333 0.036
8 7ak7:A 154 59 0.0442 0.0909 0.2373 0.37 7ak7:B
9 3pp9:A 176 80 0.0631 0.1136 0.2500 0.57 3pp9:B, 3pp9:C
10 3pp9:A 176 76 0.0694 0.1250 0.2895 1.9 3pp9:B, 3pp9:C
11 5us1:A 189 80 0.0662 0.1111 0.2625 0.63 7jzs:A, 5us1:B, 5us1:C, 5us1:D, 5us1:E, 5us1:F, 5us1:G, 5us1:H, 5us1:I, 5us1:K, 5us1:L, 6vou:A, 6vou:B, 6vr2:A, 6vr2:B, 6vr3:A, 6vr3:B, 6vta:A, 6vta:B
12 1i1d:D 161 66 0.0631 0.1242 0.3030 0.82 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
13 5f47:B 152 43 0.0442 0.0921 0.3256 1.1 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
14 5kbt:A 973 96 0.0852 0.0277 0.2812 1.4 5kbu:A, 5kbu:C, 4u5c:D, 4uqj:A, 4uqj:B, 4uqj:C, 4uqj:D, 6xsr:A
15 3mk4:A 285 94 0.0757 0.0842 0.2553 1.5
16 7cs1:A 191 52 0.0473 0.0785 0.2885 1.9 7cs0:A, 7cs0:B, 7cs1:B, 7csi:A, 7csi:B, 7csj:A, 7csj:B
17 4zbg:A 154 106 0.0820 0.1688 0.2453 1.9
18 7mx2:A 152 54 0.0568 0.1184 0.3333 2.6 7rb3:A
19 1wwz:A 157 71 0.0726 0.1465 0.3239 2.8 1wwz:B
20 6g96:A 175 59 0.0505 0.0914 0.2712 3.5 7ak9:A, 7ak9:B, 6g96:B, 7zg5:A, 7zg5:B
21 5jph:B 144 50 0.0473 0.1042 0.3000 4.0 5jph:A, 5jph:C
22 7zkt:B 202 98 0.0852 0.1337 0.2755 4.2 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
23 5v2p:A 287 45 0.0536 0.0592 0.3778 4.2 4dey:A
24 8e0e:A 322 45 0.0536 0.0528 0.3778 4.2 1t0j:B, 1t3l:A, 5v2q:A
25 1vyt:A 273 45 0.0536 0.0623 0.3778 4.2
26 7ovv:B 196 60 0.0599 0.0969 0.3167 4.3 7ovv:A
27 1vyt:B 294 45 0.0536 0.0578 0.3778 4.7
28 7lep:A 403 97 0.0757 0.0596 0.2474 5.2 7lep:C
29 5xxr:A 123 22 0.0347 0.0894 0.5000 5.9 5xxr:B, 5xxs:A, 5xxs:B
30 1m4d:A 181 51 0.0473 0.0829 0.2941 6.6 1m4d:B, 1m4g:A, 1m4g:B, 1m4i:A, 1m4i:B
31 5ib0:A 137 34 0.0315 0.0730 0.2941 8.0 5ib0:B, 5ib0:C, 5ib0:G
32 4zw2:A 319 45 0.0505 0.0502 0.3556 8.1
33 1tiq:A 173 58 0.0568 0.1040 0.3103 8.4 1tiq:B
34 2cnm:A 151 38 0.0379 0.0795 0.3158 9.6 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218