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BioLiP
>protein
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAK
TIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4nah:C 160 160 1.0000 0.9688 0.9688 3.87e-112 3f3m:A, 4nah:A, 4nah:B, 4nah:D, 4nah:E, 4nah:F, 4nat:A, 4nat:B, 4nat:C, 4nau:A, 4nau:B, 4nau:C
2 1o6b:A 163 157 0.5677 0.5399 0.5605 1.88e-60
3 1od6:A 155 150 0.4839 0.4839 0.5000 2.33e-54
4 1vlh:B 158 155 0.5290 0.5190 0.5290 1.37e-51 1vlh:A, 1vlh:F, 1vlh:C, 1vlh:D, 1vlh:E
5 9iye:B 173 157 0.4710 0.4220 0.4650 2.59e-48 8i8j:A, 8i8j:B, 8i8j:C, 8i8j:D, 8i8j:E, 8i8j:F, 8i8k:A, 8i8k:B, 8i8k:C, 8i8k:D, 8i8k:E, 8i8k:F, 8i8l:A, 8i8l:B, 8i8l:C, 8i8l:D, 8i8l:E, 8i8l:F, 8i8m:A, 8i8m:B, 8i8m:C, 8i8m:D, 8i8m:E, 8i8m:F, 8i8n:A, 8i8n:B, 8i8n:C, 8i8n:D, 8i8n:E, 8i8n:F, 8i8o:A, 8i8o:B, 8i8o:C, 8i8o:D, 8i8o:E, 8i8o:F, 9iye:A, 9iye:C, 9iye:D, 9iye:E, 9iye:F, 9iyf:A, 9iyf:B, 9iyf:C, 9iyf:D, 9iyf:E, 9iyf:F, 9iyh:A, 9iyh:B, 9iyh:C, 9iyh:D, 9iyh:E, 9iyh:F, 8zn2:A, 8zn2:B, 8zn2:C, 8zn2:D, 8zn2:E, 8zn2:F, 8zn3:A, 8zn3:B, 8zn3:C, 8zn3:D, 8zn3:E, 8zn3:F
6 6cck:B 160 154 0.4581 0.4437 0.4610 1.27e-47 1b6t:B, 6b7a:A, 6b7a:B, 6b7b:A, 6b7b:B, 6b7c:A, 6b7c:B, 6b7d:A, 6b7e:B, 6b7f:A, 6b7f:B, 6cck:A, 6ccl:A, 6ccl:B, 6ccm:A, 6ccn:A, 6ccn:B, 6cco:A, 6ccq:A, 6ccq:B, 6ccs:A, 6ccs:B, 6chl:A, 6chl:B, 6chm:A, 6chm:B, 6chn:A, 6chn:B, 6cho:A, 6cho:B, 6chp:A, 6chp:B, 6chq:A, 6ckw:A, 6ckw:B, 1gn8:A, 1gn8:B, 1h1t:A, 1h1t:B, 1qjc:B
7 5ts2:A 165 152 0.4710 0.4424 0.4803 2.12e-47 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
8 3k9w:A 163 154 0.4710 0.4479 0.4740 1.32e-46 3pxu:A
9 5o08:A 160 157 0.4452 0.4313 0.4395 2.67e-46 5o08:B, 5o08:C, 5o0a:A, 5o0a:B, 5o0a:C, 5o0b:A, 5o0b:B, 5o0b:C, 5o0c:A, 5o0c:B, 5o0c:C, 5o0d:B, 5o0d:C, 5o0f:B, 5o0f:C, 5o0h:B, 5o0h:C, 8qid:A, 8qid:B, 8qid:C, 8qix:B, 8qix:C, 8qiy:A, 8qiy:B, 8qj8:A, 8qj8:B, 8qj8:C, 7ywm:A, 7ywm:B, 7ywm:C, 7yxz:A, 7yxz:B, 7yxz:C, 7yy0:B, 7yy0:C, 7yy1:A, 7yy1:B, 7yy1:C, 7yy2:A, 7yy2:B, 7yy2:C, 7yy3:A, 7yy3:B, 7yy3:C, 7yy4:B, 7yy4:C, 7yy5:B, 7yy5:C, 7yy6:A, 7yy6:B, 7yy6:C, 7yy7:B, 7yy7:C, 7yy8:B, 7yy8:C, 7yy9:A, 7yy9:B, 7yy9:C, 7yya:A, 7yya:B, 7yyb:B, 7yyb:C, 7yyc:A, 7yyc:B, 7yyc:C
10 6a6d:A 163 158 0.4452 0.4233 0.4367 2.99e-46 6a75:A, 6a7d:A, 8i8p:A, 6j3m:A, 6jnh:A, 6jog:A, 6kkw:A, 5yh7:A, 5yrr:A, 5zzc:A
11 3nbk:D 163 157 0.4323 0.4110 0.4268 4.93e-45 6g6v:A, 3lcj:A, 3nba:A, 3nba:B, 3nba:C, 3nba:D, 3nbk:A, 3nbk:B, 3nbk:C, 3pnb:A, 3pnb:B, 3pnb:C, 3pnb:D, 6qmf:A, 6qmg:A, 6qmh:A, 6qmi:A, 3rba:A, 3rhs:A, 3uc5:A
12 3nd6:A 152 150 0.4323 0.4408 0.4467 8.22e-41 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
13 3l92:A 159 156 0.4258 0.4151 0.4231 1.02e-40
14 4f3r:B 149 148 0.4258 0.4430 0.4459 3.17e-40
15 3otw:A 157 154 0.4387 0.4331 0.4416 1.39e-36 3otw:D, 3otw:B, 3otw:C, 3otw:E, 3otw:F
16 1lw7:A 344 98 0.1419 0.0640 0.2245 0.002
17 1f9a:A 164 86 0.1613 0.1524 0.2907 0.004 1f9a:B, 1f9a:C, 1f9a:D, 1f9a:E, 1f9a:F
18 5das:A 198 31 0.0903 0.0707 0.4516 0.072 6buv:B, 4s1o:A, 4ybr:A, 4ybr:B
19 5das:C 180 31 0.0903 0.0778 0.4516 0.076 5das:B, 5das:D, 4s1o:B
20 2g9z:A 297 85 0.1548 0.0808 0.2824 0.54 2g9z:B, 2hh9:A, 2hh9:B
21 1coz:A 126 38 0.0710 0.0873 0.2895 0.97 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
22 8i34:A 175 67 0.1290 0.1143 0.2985 1.2 8i34:C, 8i34:E, 8i34:G
23 5llt:A 205 48 0.1032 0.0780 0.3333 1.2 5llt:B, 5lm3:A
24 5db4:B 175 31 0.0903 0.0800 0.4516 1.4
25 4ymi:B 198 31 0.0903 0.0707 0.4516 1.5 5db4:A, 5deo:A, 5deo:B, 5deo:C, 5deo:D, 5vir:A, 5vir:B, 4ymi:A
26 1k4m:A 213 24 0.0710 0.0516 0.4583 1.7 1k4m:B, 1k4m:C
27 4wso:A 227 24 0.0710 0.0485 0.4583 2.2 4wso:B
28 3e27:C 189 18 0.0710 0.0582 0.6111 2.9 3e27:A, 3e27:B, 3e27:D, 3hfj:A, 3hfj:B, 3mla:A, 3mla:B, 3mlb:A, 3mlb:B, 3mmx:B, 3mmx:C, 3mmx:A, 3mmx:D, 2qtn:B, 2qtr:A, 2qtr:B, 2qtr:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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