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BioLiP
>protein
MEGRLLLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVY
HDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLW
HAAMLVHTDLDMLSAVLKVPSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTITEKEESLARELFDKKYSTE
EWNMGLL

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2art:A 247 247 1.0000 1.0000 1.0000 0.0 2ars:A, 2aru:A, 2c8m:A, 2c8m:B, 2c8m:C, 2c8m:D
2 8crj:A 335 244 0.3117 0.2299 0.3156 3.85e-30 8cri:A, 8crl:A
3 5ij6:A 322 241 0.2713 0.2081 0.2780 3.65e-21
4 5iby:A 321 246 0.2470 0.1900 0.2480 3.25e-20 5ich:A, 5ich:B, 5icl:A, 5icl:B, 5idh:A
5 2e5a:A 329 251 0.2672 0.2006 0.2629 1.17e-19
6 3a7a:A 337 256 0.2794 0.2047 0.2695 2.08e-19 3a7a:C, 3a7r:A, 4tvw:A, 4tvw:B, 4tvw:C, 4tvw:D, 4tvy:A, 4tvy:B, 1x2h:A, 1x2h:B
7 5t8u:B 336 251 0.2510 0.1845 0.2470 2.95e-19 5t8u:A
8 6jom:A 331 256 0.2470 0.1843 0.2383 7.61e-13 6jom:B
9 2qhs:A 210 206 0.1781 0.2095 0.2136 1.90e-05 2qhu:A, 2qhv:A
10 4re6:A 577 59 0.0729 0.0312 0.3051 1.8 2hu5:A, 2hu5:B, 2hu7:A, 2hu7:B, 2hu8:A, 2hu8:B, 4re5:A, 4re5:B, 4re6:C, 1ve7:A, 1ve7:B
11 2ifw:A 206 51 0.0648 0.0777 0.3137 3.9 2ifr:A, 2ifw:B, 1s2k:A
12 8k60:F 315 39 0.0526 0.0413 0.3333 4.3 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
13 3hn8:A 279 80 0.0931 0.0824 0.2875 5.9 1dqv:A, 3hn8:B, 3hn8:C
14 6bzo:F 326 39 0.0526 0.0399 0.3333 6.5 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
15 5dx5:A 399 86 0.1296 0.0802 0.3721 8.9 5dx5:B
16 8eup:b 151 47 0.0688 0.1126 0.3617 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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