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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MEGMLKGEGPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEA
YAERLLKMGFRLAVADQVEPAEEAEGLVRREVTQLLTPGTLLQESLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVL
KSKSALYDELFRHRPAEVLLAPELLENGAFLDEFRKRFPVMLSEAPFEPEGEGPLALRRARGALLAYAQRTQGGALSLQP
FRFYDPGAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALRE
GVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLI
REGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE
MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPV
VERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGAGKSTFMVEMEEV
ALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYH
QVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAAR

The query sequence (length=759) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ewq:A 759 759 1.0000 1.0000 1.0000 0.0 1ewq:B, 1fw6:A, 1fw6:B, 1nne:A, 1nne:B
2 1ng9:A 794 786 0.4190 0.4005 0.4046 1.54e-158 7ai5:B, 7ai5:A, 7ai6:A, 7ai6:B, 7ai7:A, 7ai7:B, 7aib:B, 7aib:A, 7aic:A, 7aic:B, 5akb:A, 5akb:B, 5akc:A, 5akc:B, 5akc:E, 5akc:F, 5akc:I, 5akc:J, 5akd:A, 5akd:B, 5akd:E, 5akd:F, 5akd:I, 5akd:J, 1e3m:A, 1e3m:B, 6i5f:A, 6i5f:B, 3k0s:A, 3k0s:B, 1ng9:B, 1oh5:A, 1oh5:B, 1oh6:A, 1oh6:B, 1oh7:A, 1oh7:B, 1oh8:A, 1oh8:B, 1w7a:A, 1w7a:B, 1wb9:A, 1wb9:B, 1wbb:A, 1wbb:B, 1wbd:A, 1wbd:B, 2wtu:A, 2wtu:B, 3zlj:A, 3zlj:B
3 5x9w:A 771 776 0.4005 0.3943 0.3918 9.99e-151 5x9w:B, 5yk4:A, 5yk4:B
4 3thw:B 860 831 0.3202 0.2826 0.2924 4.15e-81 8oma:B, 8omo:B, 8omq:B, 3thx:B, 3thy:B, 3thz:B
5 8olx:B 836 815 0.3149 0.2859 0.2933 1.88e-79 8om5:B, 8om9:B
6 8ag6:A 896 598 0.2490 0.2109 0.3161 3.91e-78 2o8b:A, 2o8c:A, 2o8d:A, 2o8e:A, 2o8f:A, 8olx:A, 8om9:A, 8oma:A, 8omq:A, 3thw:A, 3thx:A, 3thy:A, 3thz:A
7 8om5:A 828 594 0.2451 0.2246 0.3131 8.78e-78 8omo:A
8 8ag6:B 975 924 0.3426 0.2667 0.2814 4.64e-68 2o8b:B, 2o8c:B, 2o8d:B, 2o8e:B, 2o8f:B
9 7ou2:B 650 288 0.1818 0.2123 0.4792 4.20e-67
10 7ou2:B 650 388 0.1686 0.1969 0.3299 6.09e-38
11 7ou2:A 721 251 0.1726 0.1817 0.5219 1.84e-66 5akb:E, 7oto:B, 7oto:A, 7ou0:B, 7ou0:A, 7ou4:A, 7ou4:B
12 7ou2:A 721 434 0.1963 0.2067 0.3433 6.21e-54 5akb:E, 7oto:B, 7oto:A, 7ou0:B, 7ou0:A, 7ou4:A, 7ou4:B
13 7vuk:A 421 432 0.1818 0.3278 0.3194 1.35e-31
14 7vuk:B 472 266 0.1238 0.1992 0.3534 1.55e-30
15 7qv3:w 593 245 0.0988 0.1265 0.3061 6.64e-24
16 6zj6:AAA 360 122 0.0422 0.0889 0.2623 0.39 4ad2:A, 4ad2:B, 4ad2:C, 4ad2:D, 4ad3:A, 4ad3:B, 4ad3:C, 4ad3:D, 4ad4:A, 4ad5:A, 6fam:A, 6far:A, 6fwg:A, 6fwi:A, 6fwj:A, 6fwl:A, 6fwm:A, 6fwo:A, 6fwp:A, 6fwq:A, 6hmg:A, 6hmh:A, 5lyr:A, 5m03:A, 5m17:A, 5m3w:A, 5m5d:A, 5mc8:A, 5mel:A, 4utf:A, 4v27:A, 4v28:A
17 6c32:A 209 65 0.0264 0.0957 0.3077 1.5 6c37:A
18 8c5w:A 634 99 0.0356 0.0426 0.2727 3.6 8c5o:A
19 1a8h:A 500 62 0.0303 0.0460 0.3710 4.2 2d54:A, 2d5b:A, 3vu8:A, 1woy:A
20 6o9a:A 271 45 0.0224 0.0627 0.3778 4.5 6o9a:B
21 6sc2:B 3930 57 0.0290 0.0056 0.3860 4.6 6rla:A, 6rla:B, 6sc2:A
22 5dl7:A 402 36 0.0198 0.0373 0.4167 4.7
23 5aa6:B 595 100 0.0343 0.0437 0.2600 5.0 5aa6:A, 5aa6:C, 5aa6:D, 5aa6:E, 5aa6:F
24 8bbq:A 324 47 0.0184 0.0432 0.2979 5.1 8bbq:B, 8bbr:A, 8bbr:B
25 4rh7:A 3005 57 0.0290 0.0073 0.3860 5.1
26 7m7f:A 1390 59 0.0250 0.0137 0.3220 7.9 2fr0:A, 2fr1:A, 7m7i:A
27 3c41:J 242 23 0.0158 0.0496 0.5217 8.3 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
28 8cli:C 579 47 0.0237 0.0311 0.3830 8.3 8clj:C, 8clj:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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