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BioLiP
>protein
MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA
TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS
KDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD
AVRLFITETFTFQVVNPEALILLKF

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7kq5:A 265 265 1.0000 1.0000 1.0000 0.0 3dkt:A, 3dkt:B, 3dkt:C, 3dkt:D, 3dkt:E, 3dkt:F, 3dkt:G, 3dkt:H, 3dkt:I, 3dkt:J, 7lik:A, 7lis:A, 7lit:A, 7mu1:A, 6wkv:A, 6wkv:f, 6wkv:B, 6wkv:Q, 6wkv:C, 6wkv:I, 6wkv:D, 6wkv:H, 6wkv:s, 6wkv:E, 6wkv:v, 6wkv:F, 6wkv:W, 6wkv:G, 6wkv:V, 6wkv:o, 6wkv:P, 6wkv:J, 6wkv:3, 6wkv:M, 6wkv:Z, 6wkv:S, 6wkv:N, 6wkv:i, 6wkv:O, 6wkv:l, 6wkv:e, 6wkv:R, 6wkv:T, 6wkv:p, 6wkv:2, 6wkv:X, 6wkv:8, 6wkv:Y, 6wkv:b, 6wkv:0, 6wkv:4, 6wkv:L, 6wkv:1, 6wkv:5, 6wkv:k, 6wkv:K, 6wkv:6, 6wkv:c, 6wkv:7, 6wkv:U, 6wkv:a, 6wkv:9, 6wkv:q, 6wkv:j, 6wkv:d, 6wkv:x, 6wkv:u, 6wkv:h, 6wkv:m, 6wkv:t, 6wkv:g, 6wkv:n, 6wkv:w, 6wkv:r
2 7oe2:A 266 265 0.3849 0.3835 0.3849 4.88e-67 7oe2:B, 7oe2:C, 7oe2:D, 7oe2:E, 7oeu:A, 7oeu:B, 7oeu:C, 7oeu:D, 7oeu:E
3 8u51:A 267 270 0.3283 0.3258 0.3222 2.49e-44
4 8vjo:B 278 279 0.2415 0.2302 0.2294 1.62e-11 9b9q:A, 9b9q:B, 9b9q:C, 7s2t:A, 7s2t:B, 7s2t:C, 7s4q:A, 7s4q:B, 7s4q:C, 8tk7:B, 8tk7:A, 8tk7:C, 8vjo:A, 8vjo:C
5 6nj8:B 277 280 0.2453 0.2347 0.2321 6.49e-11 6nj8:C, 6nj8:D
6 7jfs:A 958 59 0.0717 0.0198 0.3220 2.2 7jnb:A, 7jnd:A, 7jnf:A, 5kdj:B, 5kdj:A, 5kdn:A, 5kds:A, 5kdu:A
7 3nbc:A 148 44 0.0528 0.0946 0.3182 3.0 3nbd:A, 3nbd:B
8 4v3p:Lk 77 24 0.0453 0.1558 0.5000 3.2 4v7e:Ci
9 3u44:A 1122 64 0.0792 0.0187 0.3281 4.4 3u4q:A
10 4zef:A 239 29 0.0377 0.0418 0.3448 6.1
11 7qok:A 1361 68 0.0566 0.0110 0.2206 6.7
12 1zdl:A 484 35 0.0566 0.0310 0.4286 8.6 3dgz:A, 1zkq:A
13 8ip8:AB 100 24 0.0453 0.1200 0.5000 9.6 8ipa:AB, 8ipb:AB, 8jiv:Ci

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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