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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKDMKLYLKLQ
IVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVR

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ebt:K 172 130 0.9683 0.7093 0.9385 2.36e-82 7ad8:G, 8ebu:K, 8ebx:K, 8eby:K, 6j44:A, 6lae:A, 6lae:B, 6ro4:G, 1xpa:A
2 5a39:B 115 101 0.2381 0.2609 0.2970 1.23e-07 5a39:A, 5a3d:A, 5a3d:B, 5g32:A, 5g32:B, 5g33:A, 5g33:B, 5g34:A, 5g34:B, 5g35:A, 5g35:B, 5lcl:A, 5lcl:B, 5lcm:A, 5lcm:B
3 4ddt:A 1102 96 0.2143 0.0245 0.2812 0.70 4ddu:A, 4ddv:A, 4ddv:B, 4ddw:A, 4ddx:A, 4ddx:B, 7fsf:A
4 6sw9:C 61 30 0.0714 0.1475 0.3000 1.1 6swc:C, 6swd:C, 7zag:C, 7zah:C, 7zai:C, 7zhg:C
5 6tmf:W 56 28 0.0794 0.1786 0.3571 1.1 6skf:Az, 6skg:Az, 6th6:Az
6 8txo:J 1162 125 0.2540 0.0275 0.2560 1.4
7 6rxt:CM 445 46 0.1270 0.0360 0.3478 1.8 5oql:d, 6rxu:CM, 6rxv:CM, 6rxx:CM, 6rxy:CM, 6rxz:CM
8 8sy7:J 1052 125 0.2540 0.0304 0.2560 2.0 8sy5:J
9 2ytt:A 46 18 0.0794 0.2174 0.5556 3.7
10 5j7i:B 456 46 0.1429 0.0395 0.3913 3.8 5j7i:C, 5j7i:D
11 2epr:A 48 21 0.0873 0.2292 0.5238 4.7
12 5v3g:D 170 62 0.1429 0.1059 0.2903 5.3 5egb:A, 5eh2:F, 5eh2:E, 5ei9:E, 5ei9:F, 5v3g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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