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BioLiP
>protein
MEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKLNHVNQYDYV
LTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGR
KIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRAPDGSVVTQRIRMEMHKVDAVFVGTGDLFAAM
LLAWTHKHPNNLKVACEKTVSAMHHVLQRTIKCAKAKSGEGVKPSPAQLELRMVQSKKDIESPEIVVQATVL

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1rfu:A 312 312 1.0000 1.0000 1.0000 0.0 1lhr:A, 1lhr:B, 1rft:A, 1rfu:B, 1rfu:C, 1rfu:D, 1rfu:E, 1rfu:F, 1rfu:G, 1rfu:H, 1rfv:A, 1rfv:B, 1ygj:A, 1ygk:A, 1yhj:A
2 4en4:A 310 310 0.8622 0.8677 0.8677 0.0 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
3 6yk0:A 309 309 0.8718 0.8803 0.8803 0.0 6yk0:B, 6yk0:C, 6yk0:D, 6yk1:A, 6yk1:B, 6yk1:C, 6yk1:D
4 6k8z:B 298 313 0.3782 0.3960 0.3770 1.54e-54 6k8z:A, 6k90:A, 6k90:B, 6k91:A, 6k91:B, 6k92:A, 6k92:B
5 3zs7:A 277 310 0.3494 0.3935 0.3516 2.62e-50
6 5b6a:A 288 314 0.3365 0.3646 0.3344 6.84e-43
7 1td2:A 287 180 0.2147 0.2334 0.3722 2.97e-32 1td2:B
8 6su9:A 295 323 0.2917 0.3085 0.2817 4.53e-32 6su9:B
9 4s1h:A 287 272 0.2372 0.2578 0.2721 5.44e-31 4s1h:B, 4s1i:A, 4s1i:B
10 2ddo:A 263 241 0.2212 0.2624 0.2863 5.92e-21 2ddw:A, 2ddw:B
11 5zwb:A 271 238 0.2147 0.2472 0.2815 1.10e-20 5zw9:A, 5zwa:A, 5zwa:B
12 3mbh:A 290 218 0.1923 0.2069 0.2752 2.35e-10 3mbh:B, 3mbh:C, 3mbh:D, 3mbh:E, 3mbh:F, 3mbj:A
13 1gqt:B 307 127 0.1346 0.1368 0.3307 3.05e-06 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
14 2i5b:A 269 147 0.1282 0.1487 0.2721 1.13e-05 2i5b:C, 2i5b:D, 2i5b:B, 2i5b:E
15 7r8y:A 228 110 0.1186 0.1623 0.3364 2.30e-05
16 4xck:A 306 62 0.0833 0.0850 0.4194 5.31e-05 4xck:B, 4xck:C, 4xck:D, 4xda:A, 4xda:B, 4xda:C, 4xda:D
17 3hyo:A 273 143 0.1410 0.1612 0.3077 0.001 3ibq:A
18 6a8a:A 327 121 0.0994 0.0948 0.2562 0.005 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B
19 7l07:A 214 191 0.1538 0.2243 0.2513 0.009
20 5c41:A 317 133 0.1154 0.1136 0.2707 0.010 5byf:A, 5byf:B, 5c3y:A, 5c3y:B, 5c3y:C, 5c3y:D, 5c3y:E, 5c3y:F, 5c3y:G, 5c3y:H, 5c3y:I, 5c3y:J, 5c3y:K, 5c3y:L, 5c3z:A, 5c3z:B, 5c40:A, 5c40:B, 5c41:B, 5c41:C, 5c41:D, 2fv7:A, 2fv7:B, 6wjz:A, 6wjz:B, 6wk0:A, 6wk0:B, 6wk0:C, 6wk0:D
21 4ywr:A 228 62 0.0673 0.0921 0.3387 0.080
22 4c5k:D 276 83 0.0801 0.0906 0.3012 0.17 4c5k:A, 4c5k:B, 4c5k:C, 4c5l:A, 4c5l:B, 4c5l:C, 4c5l:D, 4c5m:A, 4c5m:B, 4c5m:C, 4c5m:D, 4c5n:A, 4c5n:B, 4c5n:C, 4c5n:D
23 7w93:A 307 70 0.0641 0.0651 0.2857 0.52 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
24 6zm0:AAA 155 102 0.0833 0.1677 0.2549 2.1
25 8gna:A 1188 57 0.0737 0.0194 0.4035 2.6
26 2v5k:A 260 40 0.0449 0.0538 0.3500 3.2 4b5s:A, 4b5s:B, 4b5t:A, 4b5t:B, 4b5u:A, 4b5u:B, 4b5v:A, 4b5v:B, 4b5w:A, 4b5w:B, 4b5w:C, 4b5w:D, 4b5w:E, 4b5w:F, 2v5k:B
27 3avt:A 1203 41 0.0577 0.0150 0.4390 3.3 7abz:6, 5afi:z, 3agp:A, 3agq:A, 3avu:A, 3avv:A, 3avw:A, 3avx:A, 3avy:A, 7bbn:A, 7bbn:B, 2bvn:A, 2bvn:B, 1efm:A, 1etu:A, 4fwt:A, 2hcj:A, 2hcj:B, 2hdn:A, 2hdn:B, 2hdn:C, 2hdn:D, 2hdn:E, 2hdn:F, 2hdn:G, 2hdn:H, 2hdn:I, 2hdn:J, 2hdn:K, 2hdn:L, 5i4r:C, 5i4r:D, 5i4r:G, 5i4r:H, 3mmp:G, 5opd:A, 5opd:B, 4pc2:A, 4pc2:B, 4pc3:A, 4pc3:B, 4pc6:A, 4pc6:B, 4pc7:A, 3u6b:B, 3u6b:A, 3vnu:A, 3vnv:A, 6wd4:8, 6wd7:8, 6wd9:8, 6wda:8
28 1jxi:A 254 126 0.1026 0.1260 0.2540 4.7 1jxi:B
29 7y80:A 1218 43 0.0641 0.0164 0.4651 5.3 8gu6:A
30 7y84:A 1242 43 0.0641 0.0161 0.4651 5.3 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
31 8d8n:B 1256 43 0.0641 0.0159 0.4651 5.3 8d9e:B, 8d9i:B, 7y81:A
32 7xss:B 1282 43 0.0641 0.0156 0.4651 5.3 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
33 7y8t:A 1298 43 0.0641 0.0154 0.4651 5.3 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
34 7y82:A 1341 43 0.0641 0.0149 0.4651 5.3
35 8d97:A 1600 43 0.0641 0.0125 0.4651 5.3
36 6gej:Y 447 52 0.0641 0.0447 0.3846 7.0 8ets:W, 8ets:U, 8ets:Y, 8etu:W, 8etu:U, 8etu:Y, 8etw:W, 8etw:U, 8etw:Y, 8eu9:W, 8eu9:U, 8eu9:Y, 8euf:W, 8euf:U, 8euf:Y, 6gej:U, 6gej:W, 6gen:U, 6gen:W, 6gen:Y
37 3in1:A 312 107 0.0962 0.0962 0.2804 8.3 3in1:B
38 6yjt:AAA 513 85 0.0833 0.0507 0.3059 8.5 8ce3:A, 6yjt:BBB, 6yju:AAA, 6yju:BBB, 6yjv:AAA, 6yjv:BBB, 5zic:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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