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BioLiP
>protein
MEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLMTEVDLFILTQRIKVLNADTQETMMDHPLRTI
SYIADIGNIVVLMARRRYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLR

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1x11:A 135 133 0.9769 0.9407 0.9549 4.57e-88 1aqc:B, 1x11:B
2 3sv1:A 163 139 0.9000 0.7178 0.8417 1.79e-81 1aqc:A, 3sv1:B, 3sv1:C
3 6itu:A 146 135 0.3308 0.2945 0.3185 2.11e-09
4 8ym2:A 149 129 0.3000 0.2617 0.3023 1.21e-04
5 1shc:A 195 86 0.1692 0.1128 0.2558 1.50e-04 2l1c:A
6 3so6:A 137 130 0.2154 0.2044 0.2154 0.035
7 7ob9:A 1535 40 0.1077 0.0091 0.3500 2.0 7oba:A
8 7vbc:A 1477 40 0.1077 0.0095 0.3500 2.2 7vba:A, 7vbb:A
9 7obb:A 1510 40 0.1077 0.0093 0.3500 2.2
10 1eg4:A 260 47 0.1231 0.0615 0.3404 3.3
11 5y6p:dy 303 64 0.1385 0.0594 0.2812 7.8 5y6p:dz
12 5o9c:A 348 35 0.0923 0.0345 0.3429 8.1 5o9c:D, 5o9c:B
13 6ovf:A 154 82 0.1462 0.1234 0.2317 9.1 1m7e:A, 1m7e:B, 1m7e:C, 6o5o:A, 6o5o:B, 6ovf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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