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BioLiP
>protein
MEDILARHRKENKDLQNKITGMKKQATKSKRKEVNSKCLDLQDKLKTKQENEIRDWKIANVTPEKLLEQLSNRQKERLAK
RDAAIAKMKEEAALEASKQPDLKKMEQESIDQLCELKKLKQFDIQPDGHSLFASILDQLKLRHDPKKLDQDMDVMKLRWL
SCNYVQEHRDDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRPIQVYNECGKNPELKL
VYYKHSYALGEHYNSLHDS

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8c83:x 259 259 1.0000 1.0000 1.0000 0.0 8cah:G, 8cas:x, 8cbj:K
2 6tmi:B 246 64 0.0849 0.0894 0.3438 0.34
3 7cf9:A 3949 105 0.0965 0.0063 0.2381 0.44 7cf9:C, 7cf9:E, 7cf9:G, 8dtb:G, 8dtb:D, 6m2w:A, 6m2w:D, 6m2w:G, 6m2w:J
4 4mlp:C 492 181 0.1660 0.0874 0.2376 0.55 7ej9:A, 7ej9:B, 4i6g:A, 4i6g:B, 6kx8:A, 6kx8:B, 4mlp:A, 4mlp:B, 4mlp:D, 4u8h:A, 4u8h:C, 7v8y:A, 7v8z:A
5 4bos:A 164 44 0.0579 0.0915 0.3409 0.64
6 4cej:B 1156 90 0.0927 0.0208 0.2667 4.7 4ceh:B, 4cei:B, 3u44:B, 3u4q:B
7 5jze:A 159 58 0.0656 0.1069 0.2931 4.9 5jze:C
8 8ki8:A 1621 70 0.0695 0.0111 0.2571 4.9
9 8ki7:A 2003 70 0.0695 0.0090 0.2571 5.6
10 8e9h:G 782 59 0.0656 0.0217 0.2881 5.7 8e9g:G, 8e9i:G
11 3abo:A 453 108 0.1004 0.0574 0.2407 6.1 3abo:C, 3abq:A, 3abq:C, 3abr:A, 3abr:C, 3abs:A, 3abs:C, 3any:A, 3any:C, 3ao0:A, 3ao0:C, 7xrm:A, 7xrm:C, 7xrn:A, 7xrn:C, 5ysn:A, 5ysn:C, 5ysr:A, 5ysr:C
12 7stm:A 801 54 0.0579 0.0187 0.2778 7.0 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
13 5anr:A 245 22 0.0386 0.0408 0.4545 8.2
14 7t65:A 4252 112 0.1004 0.0061 0.2321 8.8 7t64:A, 7t64:B, 7t64:C, 7t64:D, 7t65:B, 7t65:C, 7t65:D
15 7tzc:A 4404 112 0.1004 0.0059 0.2321 8.8 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
16 7dvq:3 1193 47 0.0541 0.0117 0.2979 8.9
17 7sqc:1A 1639 62 0.0772 0.0122 0.3226 8.9
18 7sqc:1B 1660 62 0.0772 0.0120 0.3226 8.9
19 7sqc:1C 1700 62 0.0772 0.0118 0.3226 8.9 7sqc:1D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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