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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEAKTMKDMQKEVDAYIGQFKEGYFSPLAMMARLTEEMGELAREVNHYYGEERSIEEELGDVLFVMICMANSLNIDLETA
HNIVMNKFNTRDKDR

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ie9:C 95 95 1.0000 1.0000 1.0000 1.33e-67 5ie9:A, 5ie9:B, 5ie9:D
2 6sqw:A 114 80 0.2421 0.2018 0.2875 0.013 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
3 3crc:A 225 59 0.1895 0.0800 0.3051 0.023 3crc:B
4 2q5z:B 94 96 0.2947 0.2979 0.2917 0.19 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
5 7mu5:A 110 79 0.2316 0.2000 0.2785 0.21 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
6 6s73:A 269 79 0.2211 0.0781 0.2658 2.3 5de2:A, 5de2:B, 6s73:B, 6s73:C, 6s75:A, 6s75:B, 6s75:C, 2wqn:A
7 2ykt:A 225 74 0.2421 0.1022 0.3108 2.7
8 4txl:C 290 38 0.1263 0.0414 0.3158 3.1 4txl:D, 4txl:A, 4txl:B, 4txm:A, 4txm:B, 4txn:A, 4txn:B, 4txn:C, 4txn:D
9 3cdx:A 329 63 0.2000 0.0578 0.3016 3.3 3cdx:B, 3cdx:C, 3cdx:D, 3cdx:E, 3cdx:F
10 3c46:A 1095 37 0.1263 0.0110 0.3243 3.3 3c2p:A, 3c2p:B, 3c3l:A, 3c3l:B, 3c46:B, 4ff1:A, 4ff1:B, 4ff2:A, 4ff2:B, 4ff3:A, 4ff3:B, 4ff4:A, 4ff4:B, 3q0a:A, 3q0a:B, 3q22:A, 3q22:B, 3q23:A, 3q23:B, 3q24:A, 3q24:B
11 3c1y:A 349 56 0.1789 0.0487 0.3036 4.5 3c1y:B, 3c21:A, 3c21:B, 3c23:A, 3c23:B, 4yvz:A, 4yvz:B, 4yxj:A, 4yxj:B, 4yxm:A, 4yxm:B
12 3rde:A 552 32 0.1158 0.0199 0.3438 4.8 3rde:B, 3rde:C, 3rde:D
13 8hey:D 1270 36 0.1053 0.0079 0.2778 5.8
14 2d3l:A 481 31 0.1368 0.0270 0.4194 6.0 2d3n:A, 1wp6:A, 1wpc:A
15 1eu3:A 210 18 0.0947 0.0429 0.5000 7.6 1eu3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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