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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEAILSKMKEVVENPNAAVKKYKSETGKKAIGCFPVYCPEEIIHAAGMLPVGIWGGQTELDLAKQYFPAFACSIMQSCLE
YGLKGAYDELSGVIIPGMCDTLICLGQNWKSAVPHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKI
HESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFFMRKEEHTELVKDLIAKLNAMPEEVCSGKKVLLTGILAD
SKDILDILEDNNISVVADDLAQETRQFRTDVPAGDDALERLARQWSNIEGCSLAYDPKKKRGSLIVDEVKKKDIDGVIFC
MMKFCDPEEYDYPLVRKDIEDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMMSL

The query sequence (length=374) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3o3m:D 375 374 1.0000 0.9973 1.0000 0.0 3o3m:B, 3o3n:B, 3o3n:D, 3o3o:B
2 7yzm:A 422 363 0.2540 0.2251 0.2617 1.99e-19 6eno:A, 7yyl:C, 7yyl:D, 7yyl:A, 7yyl:B, 7yzm:B, 7yzm:C, 7yzm:D, 7yzq:C, 7yzq:D, 7yzq:A, 7yzq:B
3 7s78:H 933 43 0.0401 0.0161 0.3488 0.36 6b1t:E, 6b1t:F, 6b1t:D, 6b1t:A, 6b1t:C, 6cgv:A, 6cgv:C, 7s78:D, 7s78:F, 7s78:E, 7s78:G, 7s78:J, 7s78:L
4 7w64:C 395 48 0.0401 0.0380 0.3125 0.84 7w64:A, 7w64:B, 7w64:D, 7w64:F, 7w64:E
5 5v9t:B 593 89 0.0615 0.0388 0.2584 1.1 5ceh:A, 5k4l:B, 5k4l:A, 5v9p:A, 5v9t:A
6 4m87:A 257 109 0.0615 0.0895 0.2110 4.8 4m87:B, 4m89:A, 4m89:B
7 1cr5:A 178 55 0.0455 0.0955 0.3091 5.3 1cr5:B, 1cr5:C
8 5yj3:C 70 49 0.0321 0.1714 0.2449 6.0 5yj3:D
9 6k0w:A 528 91 0.0615 0.0436 0.2527 8.1
10 8z97:C 552 69 0.0401 0.0272 0.2174 8.3
11 8z9h:C 748 69 0.0401 0.0201 0.2174 9.0 8z90:C, 8z9r:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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