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BioLiP
>protein
MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGRTMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADAN
AKGEVRAYVSNPQVHFDLNAAGKLDVRRAVGTNGTLSVVKDLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVG
VLVNPDNTILAAGGFIIQLMPGTDDETITKIEQRLSQVEPISKLIQKGLTPEEILEEVLGEKPEILETMPVRFHCPCSKE
RFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLR

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1vzy:A 290 286 1.0000 0.9862 1.0000 0.0 1vzy:B
2 1vq0:A 290 270 0.3776 0.3724 0.4000 4.87e-66 1vq0:B
3 4wnb:A 169 73 0.0734 0.1243 0.2877 0.074 4w78:G
4 7p9q:A 454 91 0.1049 0.0661 0.3297 0.13 7p9q:B, 7p9q:C, 7p9q:D, 7p9q:E, 7p9q:F
5 6jhf:A 653 57 0.0629 0.0276 0.3158 0.49 6jeq:A, 6jfj:A, 6jfx:A, 6jhg:A, 6jhh:A, 6jhi:A
6 4ym7:BA 1462 40 0.0629 0.0123 0.4500 1.7 6hko:A, 6hlq:A, 6hlr:A, 5m5x:A, 5oa1:A, 5w5y:A, 5w64:A, 5w65:A, 5w66:A
7 1ea0:A 1452 153 0.1399 0.0275 0.2614 1.8 1ea0:B
8 5m3f:A 1459 40 0.0629 0.0123 0.4500 1.8 5n61:A
9 6hls:A 1431 40 0.0629 0.0126 0.4500 1.8 5lmx:A
10 6s6t:A 1472 153 0.1399 0.0272 0.2614 1.8 6s6s:A, 6s6s:B, 6s6s:C, 6s6s:D, 6s6t:B, 6s6t:C, 6s6t:D, 6s6u:A, 6s6u:B, 6s6u:C, 6s6u:D, 6s6u:E, 6s6u:F, 6s6x:A, 6s6x:B, 6s6x:C, 6s6x:D, 6s6x:E, 6s6x:F, 2vdc:A, 2vdc:B, 2vdc:C, 2vdc:D, 2vdc:E, 2vdc:F
11 5m5w:A 1493 40 0.0629 0.0121 0.4500 1.8 4c3i:A, 4ym7:AA, 4ym7:CA, 4ym7:DA, 4ym7:EA, 4ym7:FA
12 5g5l:A 1480 40 0.0629 0.0122 0.4500 1.9 6h67:A, 6h68:A, 5m3m:A, 5m5y:A, 5m64:A, 5n5y:A, 5n5z:A, 5n60:A, 6rqt:A, 6rrd:A, 6rui:A, 6ruo:A, 6rwe:A, 6tps:A
13 4c3h:A 1523 40 0.0629 0.0118 0.4500 1.9 4c2m:A, 4c2m:P, 4c3j:A
14 2xn2:A 729 54 0.0664 0.0261 0.3519 2.1
15 5yhi:A 202 25 0.0350 0.0495 0.4000 3.9 5yhi:B
16 5bk0:A 217 61 0.0699 0.0922 0.3279 4.8
17 3qnz:A 219 55 0.0559 0.0731 0.2909 6.3 4xmk:L, 4xmk:M, 4xmk:N
18 4r4u:A 277 27 0.0385 0.0397 0.4074 6.7 4r4u:B, 4r4u:D, 4r4u:C
19 3hdi:A 414 106 0.0979 0.0676 0.2642 7.8 3hdi:B
20 6c4v:A 81 24 0.0420 0.1481 0.5000 8.1
21 5hsq:A 488 47 0.0594 0.0348 0.3617 8.5 8co5:A, 5i5l:A, 6r26:A, 6r27:A, 6r27:B, 6r27:C, 6r27:D
22 4azc:B 421 67 0.0629 0.0428 0.2687 9.2 4azc:A, 4azc:C, 4azc:D, 4azg:A, 4azg:B, 4azh:A, 4azh:B, 4azh:C, 4azh:D, 4azi:A, 4azi:B, 2yl5:A, 2yl5:C, 2yl9:C, 2yla:B, 2yla:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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