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BioLiP
>protein
MDYFKYHNMRPPFTYATLIRWAILEAPERQRTLNEIYHWFTRMFAYFRNHPATWKNAIRHNLSLHKCFVRVESEKGAVWT
VDEFE

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7tdw:A 90 84 0.9882 0.9333 1.0000 2.38e-60 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
2 3qrf:G 82 77 0.8706 0.9024 0.9610 7.40e-53 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
3 2a07:J 83 77 0.7176 0.7349 0.7922 3.90e-42 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
4 6ncm:A 91 73 0.3765 0.3516 0.4384 2.57e-21 6nce:A, 6ncm:B
5 7cby:C 100 78 0.4235 0.3600 0.4615 3.52e-21
6 6ako:C 97 78 0.4118 0.3608 0.4487 1.39e-20 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
7 8vfy:O 102 77 0.3882 0.3235 0.4286 6.78e-20 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
8 2c6y:A 98 80 0.4118 0.3571 0.4375 2.24e-19 2c6y:B
9 2hdc:A 97 79 0.3882 0.3402 0.4177 3.52e-19
10 7yze:A 87 81 0.3647 0.3563 0.3827 5.96e-19 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
11 8bzm:E 95 78 0.4118 0.3684 0.4487 2.60e-18 8bzm:I, 8bzm:A, 8bzm:J
12 7vov:A 93 79 0.3765 0.3441 0.4051 2.82e-18 7vou:C, 7vov:B
13 6el8:A 89 74 0.3529 0.3371 0.4054 5.40e-17 6el8:D
14 2uzk:A 97 67 0.3765 0.3299 0.4776 2.73e-16 2uzk:C
15 3g73:B 95 75 0.4000 0.3579 0.4533 4.58e-16 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
16 3l2c:A 85 66 0.3882 0.3882 0.5000 4.99e-16
17 7yza:A 122 79 0.3294 0.2295 0.3544 1.57e-15 7yz7:A, 7yzc:A, 7yzd:A
18 3co6:C 91 67 0.3647 0.3407 0.4627 1.60e-15 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
19 7yzg:A 121 79 0.3176 0.2231 0.3418 1.07e-13
20 7yzb:A 125 79 0.3529 0.2400 0.3797 2.11e-13
21 7y4i:A 822 87 0.2353 0.0243 0.2299 0.12 8dti:A, 8dti:B
22 6hpd:A 955 45 0.1412 0.0126 0.2667 0.66
23 1avp:A 204 51 0.1765 0.0735 0.2941 1.1 5fgy:A, 1nln:A, 4pid:A, 4pie:A
24 3bg6:A 577 27 0.1294 0.0191 0.4074 1.5 3bg6:B, 3bg6:C, 3bg6:D, 3bg6:E, 3bg6:F, 3bg6:G, 3bg6:H, 3bg7:A, 3bg7:B, 3bg7:C, 3bg7:D, 3bg7:E, 3bg7:F, 3bg7:G, 3bg7:H, 3bly:A, 2f5v:A, 2f6c:A, 3fdy:A, 2igk:A, 2igk:B, 2igk:C, 2igk:D, 2igk:E, 2igk:F, 2igk:G, 2igk:H, 2igm:A, 2igm:B, 2igm:D, 2igm:C, 2igm:E, 2igm:F, 2igm:G, 2igm:H, 2ign:A, 2ign:B, 2ign:D, 2ign:C, 2ign:E, 2ign:F, 2ign:H, 2ign:G, 2igo:A, 2igo:B, 2igo:D, 2igo:C, 2igo:E, 2igo:F, 2igo:H, 2igo:G, 3k4b:A, 3k4c:A, 3k4c:B, 3k4c:C, 3k4c:D, 3k4j:A, 3k4k:A, 3k4l:A, 3k4l:B, 3k4m:A, 3k4m:B, 3k4m:C, 3k4m:D, 3k4m:E, 3k4m:F, 3k4m:G, 3k4m:H, 3k4n:A, 3k4n:B, 3lsh:A, 3lsh:B, 3lsh:C, 3lsh:D, 3lsi:A, 3lsi:B, 3lsk:A, 3lsk:B, 3lsk:C, 3lsk:D, 3lsm:A, 3lsm:B, 4moe:A, 4moe:B, 4moe:C, 4moe:D, 4mof:A, 4mog:A, 4moh:A, 4moi:A, 4moi:B, 4moj:A, 4moj:B, 4moj:C, 4moj:D, 4mok:A, 4mok:B, 4mok:C, 4mok:D, 4mol:A, 4mol:B, 4mol:C, 4mol:D, 4mom:A, 4mom:B, 4mom:C, 4mom:D, 4moo:A, 4mop:A, 4mop:B, 4mop:C, 4mop:D, 4moq:A, 4moq:B, 4mor:A, 4mor:B, 4mor:C, 4mor:D, 4mos:A, 3pl8:A, 1tt0:A, 1tt0:B, 1tt0:C, 1tt0:D, 1tzl:A, 1tzl:B, 1tzl:C, 1tzl:D, 1tzl:E, 1tzl:F, 1tzl:G, 1tzl:H
25 5oql:E 331 27 0.1529 0.0393 0.4815 2.0 6rxt:UF, 6rxu:UF, 6rxv:UF, 6rxy:UF, 6rxz:UF
26 2efe:A 246 26 0.1059 0.0366 0.3462 3.9 2efe:C, 4g01:A
27 5eke:C 307 40 0.1529 0.0423 0.3250 6.5 5eke:A, 5eke:B, 5eke:D, 5ekp:C, 5ekp:A, 5ekp:B, 5ekp:D
28 6wpu:A 439 25 0.1059 0.0205 0.3600 8.9
29 7c8j:A 707 38 0.1529 0.0184 0.3421 9.8 7c8k:A, 8k4u:B, 8u0t:A, 7xa7:A, 7xa7:C, 7xa7:E, 7xa7:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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