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BioLiP
>protein
MDVTIERVNDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESFQEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIRH
VYVLPEARSHGIGTALLEKIMSEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHTLDKTAFADSNR

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gy9:A 149 149 1.0000 1.0000 1.0000 4.36e-111 3gya:A
2 6yug:A 143 112 0.1879 0.1958 0.2500 0.001 6yug:B
3 2bei:A 156 68 0.1275 0.1218 0.2794 0.013 2q4v:A
4 3owc:A 172 42 0.1007 0.0872 0.3571 0.14 3owc:B
5 4jxr:B 185 54 0.1208 0.0973 0.3333 0.20
6 3b8g:A 424 104 0.1812 0.0637 0.2596 0.28 3d2m:A, 3d2p:A, 3d2p:B, 4i49:A, 2r8v:A, 2r98:A
7 7daj:B 150 77 0.1611 0.1600 0.3117 0.40 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
8 2cy2:A 174 97 0.1879 0.1609 0.2887 0.45
9 2ob0:C 166 58 0.1208 0.1084 0.3103 0.47 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
10 8heh:B 147 97 0.1946 0.1973 0.2990 0.47 8heh:A
11 2q0y:A 153 58 0.1342 0.1307 0.3448 2.4
12 1tiq:A 173 61 0.1141 0.0983 0.2787 2.8 1tiq:B
13 4wp8:B 166 75 0.1141 0.1024 0.2267 3.0 5d0e:A, 5d0e:B, 5d0g:A, 5d0g:B, 5d0h:A, 5d0h:B, 5d15:A, 5d15:B, 4wp8:A, 4wp9:A, 4wp9:B, 4wpa:A, 4wpa:B
14 2d7i:A 536 76 0.1544 0.0429 0.3026 3.1 2d7r:A
15 5l7j:A 406 77 0.1611 0.0591 0.3117 3.3 6ia6:A, 5l7l:A
16 1i2k:A 269 46 0.1342 0.0743 0.4348 4.8 1et0:A, 1i2l:A
17 5in4:A 355 27 0.0738 0.0310 0.4074 7.9 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
18 7u8v:A 454 45 0.1141 0.0374 0.3778 8.5 7u8w:A, 7u8x:A, 7ulk:B, 5y3n:A
19 5xxr:A 123 23 0.0604 0.0732 0.3913 8.7 5xxr:B, 5xxs:A, 5xxs:B
20 5hgz:A 211 62 0.1275 0.0900 0.3065 9.9 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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