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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDVTIERVNDFDGYNWLPLLAKSSQEGFQLVERMLRNRREESFQEDGEAMFVALSTTNQVLACGGYMKQSGQARTGRIRH
VYVLPEARSHGIGTALLEKIMSEAFLTYDRLVLYSEQADPFYQGLGFQLVSGEKITHTLDKTAFADS

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3gy9:A 149 147 1.0000 0.9866 1.0000 2.66e-109 3gya:A
2 6yug:A 143 112 0.1905 0.1958 0.2500 0.001 6yug:B
3 2bei:A 156 68 0.1293 0.1218 0.2794 0.012 2q4v:A
4 3owc:A 172 42 0.1020 0.0872 0.3571 0.14 3owc:B
5 4jxr:B 185 54 0.1224 0.0973 0.3333 0.19
6 3b8g:A 424 104 0.1837 0.0637 0.2596 0.27 3d2m:A, 3d2p:A, 3d2p:B, 4i49:A, 2r8v:A, 2r98:A
7 7daj:B 150 77 0.1633 0.1600 0.3117 0.38 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
8 2ob0:C 166 58 0.1224 0.1084 0.3103 0.42 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
9 2cy2:A 174 97 0.1905 0.1609 0.2887 0.49
10 8heh:B 147 97 0.1973 0.1973 0.2990 0.51 8heh:A
11 2q0y:A 153 58 0.1361 0.1307 0.3448 2.1
12 1tiq:A 173 61 0.1156 0.0983 0.2787 2.4 1tiq:B
13 4wp8:B 166 75 0.1156 0.1024 0.2267 2.9 5d0e:A, 5d0e:B, 5d0g:A, 5d0g:B, 5d0h:A, 5d0h:B, 5d15:A, 5d15:B, 4wp8:A, 4wp9:A, 4wp9:B, 4wpa:A, 4wpa:B
14 5l7j:A 406 77 0.1633 0.0591 0.3117 3.3 6ia6:A, 5l7l:A
15 1i2k:A 269 46 0.1361 0.0743 0.4348 5.6 1et0:A, 1i2l:A
16 5in4:A 355 27 0.0748 0.0310 0.4074 7.5 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
17 5xxr:A 123 21 0.0612 0.0732 0.4286 8.1 5xxr:B, 5xxs:A, 5xxs:B
18 7u8v:A 454 45 0.1156 0.0374 0.3778 8.6 7u8w:A, 7u8x:A, 7ulk:B, 5y3n:A
19 7zkt:B 202 81 0.1769 0.1287 0.3210 9.2 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
20 5hgz:A 211 63 0.1293 0.0900 0.3016 9.6 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
21 8fni:9 858 33 0.0748 0.0128 0.3333 9.6 8fnk:9
22 3dpg:A 338 82 0.1429 0.0621 0.2561 10.0 4c3g:A, 4c3g:B, 3dpg:B, 3dvo:A, 3dvo:B, 3dvo:C, 3dvo:D, 3dw9:A, 3dw9:B, 3mq6:A, 3mq6:B, 3mq6:C, 3mq6:D, 3mq6:E, 3mq6:F, 3mq6:G, 3mq6:H, 3mqy:A, 3mqy:B, 3n78:A, 3n78:B, 3n7b:A, 3n7b:B, 6obj:A, 6obj:B, 7s8d:A, 7s8d:B, 7ss5:A, 7ss5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218