Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDVRIGQGYDVHQLVEGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDAAFKGADSRVLLR
ACAERVKAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLERVNVKAKTNEKLGYLGRGEGIEAQAAALLVKQG
G

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4c8e:A 161 161 1.0000 1.0000 1.0000 2.03e-114 4c8e:C, 4c8e:B, 4c8g:A, 4c8g:C, 4c8g:B, 4c8i:A, 4c8i:B, 4c8i:C, 3f0d:B, 3k2x:A, 3mbm:B
2 3iew:A 160 159 0.8758 0.8812 0.8868 3.83e-100 3f0d:A, 3f0d:C, 3f0d:D, 3f0d:E, 3f0d:F, 3f0e:A, 3f0e:B, 3f0e:C, 3f0f:A, 3f0f:B, 3f0f:C, 3f0g:A, 3f0g:B, 3f0g:C, 3f0g:D, 3f0g:E, 3f0g:F, 3ieq:A, 3ieq:C, 3ieq:B, 3iew:C, 3iew:B, 3ike:A, 3ike:B, 3ike:C, 3ikf:A, 3ikf:B, 3ikf:C, 3jvh:A, 3jvh:B, 3jvh:C, 3k14:A, 3k14:B, 3k14:C, 3k2x:C, 3k2x:B, 3ke1:A, 3ke1:B, 3ke1:C, 5l03:A, 5l03:B, 5l03:C, 5l12:A, 5l12:B, 5l12:C, 3mbm:A, 3mbm:C, 6mwf:A, 6mwf:B, 6mwf:C, 6mwi:A, 6mwi:B, 6mwi:C, 6mwj:A, 6mwj:B, 6mwj:C, 6mwk:A, 6mwk:B, 6mwk:C, 6nmo:A, 6nmo:B, 6nmo:C, 3p0z:A, 3p0z:C, 3p0z:B, 3p10:A, 3p10:C, 3p10:B, 3q8h:A, 3q8h:B, 3q8h:C, 3qhd:A, 3qhd:C, 3qhd:B, 6v3m:A, 6v3m:B, 6v3m:C
3 1t0a:A 158 157 0.6025 0.6139 0.6178 4.78e-67 1t0a:B, 1t0a:C
4 1jn1:A 157 156 0.5901 0.6051 0.6090 2.79e-64 1jn1:B, 1jn1:C, 1vh8:A, 1vh8:B, 1vh8:C, 1vh8:D, 1vh8:E, 1vh8:F, 1vha:A, 1vha:B, 1vha:C, 1vha:D, 1vha:E, 1vha:F
5 5iwx:A 158 155 0.5901 0.6013 0.6129 1.08e-63 5iwx:B, 5iwx:C, 5iwx:D, 5iwx:E, 5iwx:F, 5iwy:A, 5iwy:C, 5iwy:B, 5iwy:D, 5iwy:E, 5iwy:F
6 3esj:A 162 158 0.6273 0.6235 0.6392 3.89e-63 2amt:A, 2amt:B, 2amt:C, 2amt:D, 2amt:F, 2amt:E, 3elc:A, 3elc:B, 3elc:C, 3eor:A, 3ern:A, 3ern:B, 3ern:C, 3ern:D, 3ern:E, 3ern:F, 3fba:A, 3ghz:A, 3ghz:B, 3ghz:C, 1gx1:A, 1gx1:C, 1gx1:B, 2gzl:A, 1h47:A, 1h47:B, 1h47:C, 1h47:D, 1h47:E, 1h47:F, 1h48:A, 1h48:F, 1h48:C, 1h48:B, 1h48:D, 1h48:E, 1jy8:A, 1knj:A, 1knk:A, 3t80:A, 3t80:B, 3t80:C, 3t80:D, 3t80:E, 3t80:F, 1u3l:A, 1u3p:A, 1u40:A, 1u43:A, 1yqn:A
7 3fpi:A 161 158 0.6087 0.6087 0.6203 4.90e-63
8 5b8f:C 164 157 0.5776 0.5671 0.5924 1.82e-62 5b8f:A, 5b8f:B
9 2pmp:A 160 159 0.4534 0.4562 0.4591 6.07e-47
10 1w55:A 369 148 0.4472 0.1951 0.4865 1.25e-43 1w57:A
11 3re3:B 144 159 0.4224 0.4722 0.4277 6.32e-41
12 8xkf:C 377 151 0.3602 0.1538 0.3841 1.48e-35 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
13 5esv:G 187 125 0.4286 0.3690 0.5520 6.38e-34 5esv:E, 5esv:F
14 1iv2:A 150 153 0.3789 0.4067 0.3987 8.75e-30 1iv2:C, 1iv2:B, 1iv2:D, 1iv2:F, 1iv2:E, 1iv3:A, 1iv3:B, 1iv3:C, 1iv3:D, 1iv3:E, 1iv3:F, 1iv4:A, 1iv4:B, 1iv4:C, 1iv4:D, 1iv4:E, 1iv4:F
15 4c81:A 156 161 0.3727 0.3846 0.3727 3.17e-26 4c82:A
16 3b6n:A 150 165 0.3975 0.4267 0.3879 5.06e-26
17 2uzh:C 155 145 0.3416 0.3548 0.3793 4.40e-23 2uzh:A, 2uzh:B
18 7ezx:e2 248 70 0.1304 0.0847 0.3000 0.45 7ezx:eR, 6kgx:e3, 6kgx:eD, 7y4l:eK, 7y4l:e1, 7y5e:eA, 7y5e:e7, 7y7a:eD, 7y7a:e5, 7y7a:eg, 7y7a:ei
19 4cy8:A 539 70 0.1304 0.0390 0.3000 0.81 4cy8:B, 4cy8:C, 4cy8:D
20 8oup:B 151 39 0.0932 0.0993 0.3846 1.8 8oup:A, 8oup:C, 8oup:D
21 8sq0:A 1402 37 0.0932 0.0107 0.4054 3.1 8sq0:B, 8sql:A, 8sqm:A
22 6t6f:A 288 99 0.1553 0.0868 0.2525 8.5 8bfm:A, 8bfs:A, 2jc6:A, 2jc6:C, 6t28:AAA, 6t29:AAA, 6t6f:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218