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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLT
VPADFLYEFIEELRYRINKGLRIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSAD
EGLRTWADKIGIKLIDPKNFKNILESLV

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8kd9:C 189 187 0.9947 0.9894 1.0000 3.39e-136 8kd9:E, 8kd9:G, 8kd9:H, 8kd9:D, 8kd9:F, 8kd9:J, 8kd9:I, 8kd9:A
2 8kda:E 189 189 0.6915 0.6878 0.6878 4.81e-94 8kda:G, 8kda:H, 8kda:F, 8kda:C, 8kda:D, 8kda:I, 8kda:J, 8kda:K, 8kda:A
3 7e8o:A 194 186 0.4255 0.4124 0.4301 1.50e-53 7e8o:B, 7e8o:C, 7e8o:D
4 2bv3:A 632 110 0.1702 0.0506 0.2909 0.11 1dar:A
5 2lcq:A 161 35 0.0798 0.0932 0.4286 0.34
6 3f8h:A 137 74 0.0904 0.1241 0.2297 0.64
7 7q3g:A 517 107 0.1436 0.0522 0.2523 3.1 7q3g:E, 7q3g:D, 7q3g:C, 7q3g:B
8 7mq8:SB 440 53 0.0957 0.0409 0.3396 3.6 7mq9:SB, 7mqa:SB
9 6rxt:UL 785 70 0.0957 0.0229 0.2571 5.4 6rxu:UL, 6rxv:UL, 6rxx:UL, 6rxy:UL, 6rxz:UL
10 8i54:A 1113 65 0.1011 0.0171 0.2923 7.8
11 8h9d:A 1114 65 0.1011 0.0171 0.2923 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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