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BioLiP
>protein
MDVFAKHAVSLESPAVRHYEITPSDSTDLARRPRALRVQTGGTLVLRDETGITVTYTVFAGEILPVRPVRVLATGTTATA
VGWE

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tb9:E3 84 84 1.0000 1.0000 1.0000 3.90e-56 6tb9:D3, 6tb9:C3, 6tb9:B3, 6tb9:E2, 6tb9:D2, 6tb9:C2, 6tb9:B2, 6tba:E3, 6tba:D3, 6tba:C3, 6tba:B3, 6tba:E2, 6tba:D2, 6tba:C2, 6tba:B2, 6tba:EN, 6tba:DN, 6tba:CN, 6tba:BN, 6tba:EM, 6tba:DM, 6tba:CM, 6tba:BM, 6tba:EI, 6tba:DI, 6tba:CI, 6tba:BI, 6tba:EH, 6tba:DH, 6tba:CH, 6tba:BH, 6tba:ED, 6tba:DD, 6tba:CD, 6tba:BD, 6tba:EC, 6tba:DC, 6tba:CC, 6tba:BC, 6tba:E8, 6tba:D8, 6tba:C8, 6tba:B8, 6tba:E7, 6tba:D7, 6tba:C7, 6tba:B7, 6tsu:D2, 6tsu:A2, 6tsu:C2, 6tsu:B2, 6tsu:E2, 6tsu:E3, 6tsu:B3, 6tsu:D3, 6tsu:C3, 6tsu:A3, 6tui:D2, 6tui:A2, 6tui:C2, 6tui:B2, 6tui:E2, 6tui:E3, 6tui:B3, 6tui:D3, 6tui:C3, 6tui:A3
2 5jpq:Y 365 31 0.1190 0.0274 0.3226 2.8 5wyj:3F, 5wyk:3F
3 1ri1:A 252 29 0.1190 0.0397 0.3448 3.2 2hv9:A, 1ri2:A, 1ri3:A, 1ri4:A, 1z3c:A
4 7aju:CH 467 23 0.1071 0.0193 0.3913 3.2 7ajt:CH, 7d4i:3F, 7d5s:3F, 7d5t:3F, 7d63:3F, 6ke6:3F, 6lqp:3F, 6lqq:3F, 6lqr:3F, 6lqs:3F, 6lqt:3F, 6lqu:3F, 6lqv:3F, 6nd4:g, 7suk:SG, 5wlc:SG, 6zqb:CH, 6zqc:CH, 6zqd:CH, 6zqe:CH
5 8any:A0 215 52 0.2381 0.0930 0.3846 3.6 8csp:0, 8csq:0, 8csr:0, 8css:0, 8cst:0, 8csu:0, 7l08:A0, 8oir:Aj, 8ois:Aj, 7p2e:0, 7pnx:0, 7pny:0, 7pnz:0, 7po0:0, 7po1:0, 7po2:0, 7po3:0, 7qi4:A0, 7qi5:A0, 7qi6:A0, 8qrk:0, 8qrl:0, 8qrm:0, 8qrn:0, 6rw4:0, 6rw5:0, 6vlz:A0, 6vmi:A0, 6zm5:A0, 6zm6:A0
6 3k8k:A 650 83 0.2619 0.0338 0.2651 7.3 6bs6:A, 6bs6:B, 3k8k:B, 3k8l:A, 3k8l:B, 3k8m:A, 3k8m:B
7 3cuz:A 529 27 0.1310 0.0208 0.4074 8.7 3cv1:A, 3cv2:A, 3cv2:B
8 6z2w:E 2325 27 0.1310 0.0047 0.4074 9.2 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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