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BioLiP
>protein
MDTVKNRRTIRKYQQKDITPDLLNDLLETSFRASTMGGMQLYSVVVTRDAEKKEILSPAHFNQPMVKEAPVVLTFCADFR
RFCKYCQERNAVPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQMIIDALHLPELVFPITTVTVGYP
AESPKQVDRLPIEGIIHEESYHDYTAEDINRLYAYKESLPENKLFIEENQKETLPQVFTDVRYTKKDNEFMSENLLKVLR
RQGFMD

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3eof:A 248 246 1.0000 0.9919 1.0000 0.0 3eof:B
2 5hdj:B 248 201 0.2602 0.2581 0.3184 7.45e-30 5hdj:A
3 1zch:A 249 249 0.3049 0.3012 0.3012 1.94e-28
4 3n2s:A 248 184 0.2358 0.2339 0.3152 4.95e-27 3n2s:B, 3n2s:C, 3n2s:D
5 5hei:A 246 184 0.2520 0.2520 0.3370 4.92e-26 5hei:B, 5hei:C, 5hei:D, 5hei:E, 5hei:F, 5hei:G, 5hei:H
6 5uu6:C 236 199 0.2439 0.2542 0.3015 1.22e-23 5uu6:A, 5uu6:B, 5uu6:D
7 1bkj:A 230 189 0.2195 0.2348 0.2857 2.23e-19 1bkj:B, 2bkj:A, 2bkj:B
8 8ajx:A 240 247 0.2724 0.2792 0.2713 1.15e-17 1f5v:A, 1f5v:B, 7nb9:A, 7niy:A, 7nmp:A, 7nnx:A, 7q0o:A, 7z0w:A, 7z0w:B, 7z0w:C, 7z0w:D, 7z0w:E, 7z0w:F, 7z0w:G, 7z0w:H
9 1nox:A 200 196 0.2195 0.2700 0.2755 4.43e-14
10 4dn2:A 191 197 0.1992 0.2565 0.2487 1.19e-12 4dn2:B
11 3kwk:A 168 171 0.1707 0.2500 0.2456 1.30e-09
12 3m5k:A 168 171 0.1626 0.2381 0.2339 8.89e-08 3m5k:B
13 3e10:B 167 185 0.1870 0.2754 0.2486 1.93e-07 3e10:A
14 3koq:A 173 188 0.1911 0.2717 0.2500 2.13e-07 3h4o:A, 3koq:B, 3koq:C, 3koq:D
15 5j6c:A 173 172 0.1707 0.2428 0.2442 4.24e-07 5j6c:B
16 3ge5:A 176 182 0.1748 0.2443 0.2363 1.23e-06 3ge5:B
17 3ge6:A 210 82 0.1057 0.1238 0.3171 4.22e-04 3ge6:B
18 3gfa:A 197 200 0.1626 0.2030 0.2000 6.71e-04 3gfa:B
19 3ek3:A 187 174 0.1748 0.2299 0.2471 0.001
20 4xoq:A 204 75 0.0894 0.1078 0.2933 0.002 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
21 3gag:A 206 79 0.0894 0.1068 0.2785 0.004 3gag:B, 3gag:C, 3gag:D
22 5j62:B 209 135 0.1341 0.1579 0.2444 0.004 5j62:A
23 2i7h:A 187 191 0.1870 0.2460 0.2408 0.012 2i7h:B, 2i7h:C, 2i7h:D
24 8cqs:B 194 193 0.1870 0.2371 0.2383 0.020 8cqs:A
25 5ko7:B 200 172 0.1789 0.2200 0.2558 0.026
26 8uc3:A 180 189 0.1707 0.2333 0.2222 0.033 8uc3:B
27 3of4:A 208 60 0.0772 0.0913 0.3167 0.041 3of4:B, 3of4:C
28 2b67:A 201 201 0.1951 0.2388 0.2388 0.063 2b67:B, 2b67:C, 2b67:D
29 9c4m:A 335 117 0.1016 0.0746 0.2137 0.42 9c4m:B, 9c4m:C, 9c4m:D, 9c4m:E, 9c4m:F, 9c4m:G, 9c4m:H
30 4qlx:A 217 194 0.1707 0.1935 0.2165 0.43 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
31 1eep:A 314 28 0.0488 0.0382 0.4286 0.95
32 5ko8:B 218 188 0.1829 0.2064 0.2394 1.3 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
33 3qdl:A 178 34 0.0488 0.0674 0.3529 1.3 3qdl:B, 3qdl:C, 3qdl:D
34 8cqt:B 164 79 0.0854 0.1280 0.2658 1.4 8cqt:A
35 8dtz:A 4061 55 0.0650 0.0039 0.2909 1.6 8dtz:B, 8dtz:C, 8dtz:D
36 3eo8:A 219 210 0.1829 0.2055 0.2143 1.6 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
37 8dty:A 4004 55 0.0650 0.0040 0.2909 1.7 8dty:B, 8dty:C, 8dty:D
38 8ulg:B 824 130 0.1057 0.0316 0.2000 2.5 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
39 3tsd:B 426 69 0.0732 0.0423 0.2609 3.4
40 7pji:A 445 28 0.0447 0.0247 0.3929 3.9 4dqw:A, 4dqw:B, 6gk9:A, 6gk9:D, 7pji:B
41 5ahm:A 354 28 0.0447 0.0311 0.3929 4.3 5ahm:B
42 5ahn:A 297 28 0.0447 0.0370 0.3929 5.4
43 3f4b:B 289 119 0.1057 0.0900 0.2185 5.5 3f4b:A, 3f4b:C, 3f4b:D
44 5iko:A 807 86 0.1016 0.0310 0.2907 5.7 5ikp:A
45 7qem:B 428 28 0.0488 0.0280 0.4286 5.7 7qdx:A, 7qdx:B, 7qem:A, 7qem:D
46 7qem:C 344 28 0.0488 0.0349 0.4286 5.8
47 5dx6:B 557 37 0.0528 0.0233 0.3514 6.1 5d6r:B, 5d6r:M, 5dx6:A, 1ozf:A, 1ozf:B, 1ozg:A, 1ozg:B, 1ozh:A, 1ozh:B, 1ozh:C, 1ozh:D, 5wdg:A, 5wdg:B
48 1nc2:B 219 61 0.0813 0.0913 0.3279 6.2 1nc2:D, 1nc4:B, 1nc4:D
49 7oj2:A 353 114 0.1016 0.0708 0.2193 7.7
50 1fa9:A 834 101 0.1260 0.0372 0.3069 8.3 2ati:A, 2ati:B, 3ceh:A, 3ceh:B, 3cej:A, 3cej:B, 3cem:A, 3cem:B, 3dd1:A, 3dd1:B, 3dds:A, 3dds:B, 3ddw:A, 3ddw:B, 8ems:B, 8ems:A, 1fc0:A, 1fc0:B, 1l5q:A, 1l5q:B, 1l5r:A, 1l5r:B, 1l5s:A, 1l5s:B, 1l7x:A, 1l7x:B, 1xoi:A, 1xoi:B, 2zb2:A, 2zb2:B
51 2qll:A 806 101 0.1260 0.0385 0.3069 8.8 1em6:A, 1em6:B, 1exv:A, 1exv:B
52 3e39:A 175 183 0.1545 0.2171 0.2077 10.0 3e39:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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