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BioLiP
>protein
MDTGAKEDEDETANFSDGVTAMGFQSLDTQVSIKDILRRPVLLFNHVELDPDYTGFFIPIMPPSRMMQYKSGDKETSFQR
LIGRTPQAAIMNLFRFWRGSLRYTIIIHSTDGHPIYVTHVPHTGNRVYGLMKVNNLHEYTKVPIFGCGLTTEMIIPSVNP
SICVEVPFDTENNWAVTFDEDAQRNYSWRDKGDTVTGHLVVTPVVSVYMSVWVEAGDDFEVSNFYGPPSVKTNDWNYAFS
DEH

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6egv:A 243 243 1.0000 1.0000 1.0000 0.0 6egx:A, 6eh1:A, 6eiw:A, 5lsf:A, 5oyp:A
2 3akk:A 296 45 0.0617 0.0507 0.3333 0.65 3akk:B, 3akk:C, 3akk:D, 3akl:A, 3akl:B, 3akl:C, 3akl:D
3 7bg8:C 286 38 0.0494 0.0420 0.3158 2.7
4 3kq4:A 385 88 0.0905 0.0571 0.2500 4.2 3kq4:C, 3kq4:E, 2pmv:A, 2pmv:C
5 4xcx:A 216 70 0.1029 0.1157 0.3571 4.9 5wy0:A
6 2h8k:A 245 119 0.1152 0.1143 0.2353 6.3 2h8k:B, 2reo:A
7 6lpi:B 539 52 0.0617 0.0278 0.2885 6.5 6lpi:A, 6lpi:C, 6lpi:D
8 3aga:A 271 205 0.1770 0.1587 0.2098 6.6 3aga:B, 3agc:A
9 2jkv:A 482 53 0.0658 0.0332 0.3019 8.1 2jkv:B, 2jkv:C, 2jkv:D, 2jkv:E, 2jkv:F, 1pgn:A, 1pgo:A, 1pgp:A, 1pgq:A, 5uq9:E, 5uq9:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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