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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPSVLRANNQQF
WSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVS
YLVEVVACFAQDGSTLIDCTRDTCGANFIF

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1v9h:A 193 190 0.9842 0.9689 0.9842 3.85e-141 1j1f:A, 1j1g:A, 1uca:A, 1ucc:A, 1ucd:A
2 1iyb:A 208 199 0.3842 0.3510 0.3668 1.28e-39 1iyb:B
3 1vcz:A 204 186 0.3421 0.3186 0.3495 3.13e-29 1vd1:A, 1vd3:A
4 1sgl:A 206 187 0.2579 0.2379 0.2620 1.02e-10
5 3d3z:A 238 141 0.2263 0.1807 0.3050 1.78e-07
6 4dw4:B 163 63 0.0842 0.0982 0.2540 1.8 4dvl:A, 4dvl:B, 4dvn:B, 4dvn:A, 4dw3:A, 4dw3:B, 4dw4:A, 4dw5:A, 4dw5:B, 4dw7:A, 4dw7:B, 4dwa:A, 4dwa:B, 4dwc:A
7 5u6k:E 191 87 0.1211 0.1204 0.2644 2.5 5u6k:A, 5u6k:B, 5u6k:C, 5u6k:D
8 8c54:A 482 88 0.1211 0.0477 0.2614 4.5 8c54:B, 8c54:C, 8c54:D
9 8thc:A 479 49 0.0737 0.0292 0.2857 4.6 8thb:A, 8thd:A
10 7vmx:A 260 40 0.0737 0.0538 0.3500 5.3
11 7xjp:B 509 31 0.0579 0.0216 0.3548 6.5
12 6d4b:A 361 43 0.0842 0.0443 0.3721 8.4 6d4b:B, 6d4c:A, 6d4c:B, 5dn9:A, 5dn9:B
13 5juy:B 1234 44 0.0684 0.0105 0.2955 9.4 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
14 6dy2:B 232 108 0.1421 0.1164 0.2500 9.5 6dy2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218