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BioLiP
>protein
MDRTQTFIKDCLFTKCLEDPEKPFDYQRINKNSKIALREYINNCKKNTKKCLKLAYENKITDKEDLLHYIEEKHPTIYES
LPQYVDFVPMYKELWINYIKELLNITKNLKTFNGSLALLKLSMADYNGALLRVTKSKNKTLIGLQGIVIWDSQKFFIMIV
KGNIIDEIKCIPKKGTVFQFEIPISDDDDSALRYSILGDRFKYRSVDRAGRKFKSRRCDDMLYYIQN

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c79:D 251 251 0.9956 0.9004 0.9004 1.44e-162 6agb:D, 6ah3:D, 7c7a:D, 6w6v:D
2 6ahr:D 145 139 0.2070 0.3241 0.3381 7.82e-15 6ahu:D
3 5jj2:A 211 64 0.0793 0.0853 0.2812 0.60
4 9ja1:A 1286 49 0.0793 0.0140 0.3673 0.75
5 4fte:B 330 69 0.0925 0.0636 0.3043 0.86 4fsj:A, 4fsj:B, 4fsj:C, 4ftb:A, 4ftb:B, 4ftb:C, 4fte:C, 4fte:A, 4fts:C, 4fts:A, 4fts:B, 3lob:C
6 6zj3:SD 177 62 0.0881 0.1130 0.3226 1.1
7 2bbv:C 321 61 0.0837 0.0592 0.3115 1.3 2bbv:A, 2bbv:B
8 2vfk:A 205 48 0.0617 0.0683 0.2917 1.7 2vfl:A
9 3c7a:A 403 59 0.0749 0.0422 0.2881 2.5 3c7c:B, 3c7d:B, 3iqd:B
10 7lo5:A 1016 73 0.0881 0.0197 0.2740 2.8 7lo5:B, 7lo5:C, 7lo5:D, 7lvv:A, 7lvv:B, 7lvv:C, 7lvv:D
11 2koh:A 111 30 0.0441 0.0901 0.3333 3.1 9imp:A, 9imp:B, 9imp:C, 9imp:D, 9imp:E, 9imp:F, 6jue:L, 2k20:A
12 2r0q:C 193 23 0.0485 0.0570 0.4783 4.1 2r0q:D, 2r0q:E, 2r0q:F
13 2f2g:A 215 69 0.0749 0.0791 0.2464 4.7 2f2g:B, 2q4x:A, 2q4x:B
14 2wa2:B 259 58 0.0661 0.0579 0.2586 7.6
15 2wa2:A 223 58 0.0661 0.0673 0.2586 8.0
16 4ayb:B 1103 65 0.0881 0.0181 0.3077 8.5 3hkz:B, 3hkz:J, 2pmz:B, 2pmz:R, 4v8s:AR, 4v8s:BB, 2waq:B, 2wb1:B, 2wb1:R, 2y0s:B, 2y0s:R
17 7ezi:A 323 42 0.0573 0.0402 0.3095 9.0 7ezl:A
18 7d4i:RF 241 104 0.1366 0.1286 0.2981 9.8 7ajt:CN, 7aju:CN, 7d5t:RF, 7d63:RF, 6ke6:RF, 6lqp:RF, 6lqq:RF, 6lqr:RF, 6lqs:RF, 6lqt:RF, 5wyj:CA, 5wyk:CA, 6zqa:CN, 6zqb:CN, 6zqc:CN, 6zqd:CN, 6zqe:CN, 6zqf:CN
19 6int:A 413 53 0.0705 0.0387 0.3019 10.0 6int:B, 6int:C, 6int:D, 6int:E, 6int:F, 6int:G, 6int:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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