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BioLiP
>protein
MDRRFYGKIVIKGKIKAVTGLHIGSQEIGGIDNPVIKDPHTGLPYIPGSSLKGRLRSLFEILVNSRLGEWREKYPSLANY
SPGSCRPDNQENCGKFFNRKINRGWIHVCPDYETALACPVCRLFGASGKESNFPSRIIVRDAFLTKEWEEKWRAGEAITE
AKIEVGIDRVTSQANPRTNERVVAGAEFEFEIIYNVENTTHWRDDIKNLLTAMALLEDSYLGGSGSRGYGKVKFIFDSFE
FRPLDYYRTGKDEDIVSIDAREKSVSDILSGFDSLFSEVEGKL

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6mur:D 287 287 0.9965 0.9826 0.9826 0.0 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
2 6ifn:F 220 259 0.3216 0.4136 0.3514 5.84e-41 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
3 8x5d:K 235 246 0.2933 0.3532 0.3374 4.76e-34 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
4 9ash:H 214 232 0.2792 0.3692 0.3405 4.29e-32 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
5 4n0l:A 335 273 0.3039 0.2567 0.3150 9.64e-30 4n0l:B
6 8do6:E 205 235 0.2968 0.4098 0.3574 5.23e-26 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
7 4qts:C 186 242 0.2756 0.4194 0.3223 1.03e-25 4qts:D
8 7uzw:E 184 229 0.2650 0.4076 0.3275 6.95e-21 7uzx:E
9 8x5d:G 77 80 0.1060 0.3896 0.3750 6.35e-09
10 8x5d:G 77 45 0.0601 0.2208 0.3778 0.29
11 8bmw:F 239 239 0.2297 0.2720 0.2720 8.35e-09 8bmw:G
12 8bmw:H 275 280 0.2756 0.2836 0.2786 2.19e-05 8bmw:I
13 3x1l:D 331 59 0.0919 0.0785 0.4407 1.40e-04 3x1l:C, 3x1l:E
14 8s9u:E 678 86 0.0989 0.0413 0.3256 0.002 8s9t:E, 8s9v:E, 8s9x:E
15 8x5d:N 370 35 0.0636 0.0486 0.5143 0.018
16 8yhd:B 199 200 0.1661 0.2362 0.2350 0.025 8yhd:C, 8yhd:D, 8yhd:E, 8yhd:F, 8yhd:J, 8yhd:O, 8yhe:B, 8yhe:C, 8yhe:D, 8yhe:E, 8yhe:F, 8yhe:J, 8z4j:C, 8z4j:D, 8z4j:E, 8z4j:F, 8z4j:J, 8z4l:B, 8z4l:C, 8z4l:D, 8z4l:E, 8z4l:F, 8z4l:J, 8z99:B, 8z99:C, 8z99:D, 8z99:E, 8z99:F, 8z99:J, 8z99:P, 8z9c:B, 8z9c:C, 8z9c:D, 8z9c:E, 8z9c:F, 8z9c:J, 8z9e:C, 8z9e:D, 8z9e:E, 8z9e:F, 8z9e:J
17 8bmw:N 251 238 0.2120 0.2390 0.2521 0.039
18 8d8n:B 1256 105 0.1060 0.0239 0.2857 0.052 8d9e:B, 8d9i:B, 7y81:A
19 7y84:A 1242 105 0.1060 0.0242 0.2857 0.056 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
20 7y80:A 1218 105 0.1060 0.0246 0.2857 0.057 8gu6:A
21 8d1v:A 1229 99 0.1060 0.0244 0.3030 0.069
22 8d1v:A 1229 256 0.1979 0.0456 0.2188 6.0
23 6s6b:I 284 32 0.0565 0.0563 0.5000 0.086 6s8b:I, 6s8e:I, 6s91:I, 6sh8:I, 6shb:I, 6sic:I
24 7xss:B 1282 105 0.1060 0.0234 0.2857 0.11 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
25 8bmw:J 270 135 0.1307 0.1370 0.2741 0.14
26 8eex:A 1284 99 0.1025 0.0226 0.2929 0.23
27 9ash:J 311 25 0.0565 0.0514 0.6400 0.32 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
28 7y8t:A 1298 105 0.1095 0.0239 0.2952 0.38 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
29 6ifr:H 353 33 0.0636 0.0510 0.5455 0.56 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
30 4pqg:A 506 47 0.0530 0.0296 0.3191 0.58 4pqg:B
31 8gna:A 1188 105 0.1025 0.0244 0.2762 0.58
32 8z9e:B 170 203 0.1590 0.2647 0.2217 0.73 8yhd:A, 8z4j:B, 8z4l:A, 8z99:A, 8z9c:A
33 8wfx:N 265 18 0.0424 0.0453 0.6667 0.73
34 6s6b:D 285 47 0.0707 0.0702 0.4255 1.8 6s6b:E, 6s6b:F, 6s6b:G, 6s8b:D, 6s8b:E, 6s8b:F, 6s8b:G, 6s8e:D, 6s8e:E, 6s8e:F, 6s8e:G, 6s91:D, 6s91:E, 6s91:F, 6s91:G, 6sh8:D, 6sh8:E, 6sh8:F, 6sh8:G, 6shb:D, 6shb:E, 6shb:F, 6shb:G, 6sic:D, 6sic:E, 6sic:F, 6sic:G
35 8s9u:D 518 63 0.0707 0.0386 0.3175 2.2 8s9t:D, 8s9v:D, 8s9x:D
36 6muu:F 323 16 0.0424 0.0372 0.7500 2.4
37 6mur:F 377 16 0.0424 0.0318 0.7500 2.8 6iqw:F, 6mus:F, 6mut:F
38 6o7e:Y 361 16 0.0424 0.0332 0.7500 2.9 6o7h:F, 6o7i:F
39 8wmc:A 1249 279 0.2155 0.0488 0.2186 3.3
40 7qvd:AAA 380 69 0.0707 0.0526 0.2899 3.4
41 8s9x:A 770 182 0.1767 0.0649 0.2747 3.6 8s9t:A, 8s9u:A, 8s9v:A
42 4lt7:A 128 50 0.0530 0.1172 0.3000 4.0 2k3h:A, 4np9:A, 4ns0:A
43 5t2u:A 241 71 0.0707 0.0830 0.2817 5.8 5t2u:B, 5t2u:C, 5t2u:D
44 6flu:A 347 27 0.0424 0.0346 0.4444 6.2 6f5w:A, 6f5w:B, 6fhx:A, 6fhx:B, 6fhy:A, 6fhy:B, 6flu:B, 5mxf:A, 5mxg:A, 5mxh:A, 6rgj:A, 6rgr:A, 6rgu:A, 6rgw:A
45 3x1l:H 297 12 0.0353 0.0337 0.8333 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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