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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDREAFVQTLTACRLCPRLVAWREEVVGRKRAFRGEPYWARPVPGFGDPEARILLFGLAPGAHGSNRTGRPFTGDASGAF
LYPLLHEAGLSSKPESLPGDDLRLYGVYLTAAVRCAPPKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLA
HFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQTGRLTREMFLEVLMEAKRLAGL

The query sequence (length=219) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2d3y:A 219 219 1.0000 1.0000 1.0000 1.66e-159 2ddg:A, 2dem:A, 2dp6:A
2 1l9g:A 191 174 0.2603 0.2984 0.3276 1.00e-13 1vk2:A
3 1ui0:A 192 160 0.2283 0.2604 0.3125 1.53e-12 1ui1:A
4 4zby:A 194 157 0.2055 0.2320 0.2866 6.50e-12 4zbx:A, 4zbz:A
5 5fjv:B 207 30 0.0685 0.0725 0.5000 2.1 5fjv:A, 5fjv:E, 5fjv:C, 5fjv:D
6 5h9i:A 240 27 0.0548 0.0500 0.4444 3.5
7 4n78:A 1184 38 0.0685 0.0127 0.3947 4.8
8 2d32:A 510 69 0.0959 0.0412 0.3043 7.1 2d32:B, 2d32:C, 2d32:D, 2d33:A, 2d33:B, 2d33:C, 2d33:D, 1va6:A, 1va6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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