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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDNLEVKAKINQGLYKITPRHKGTSFIWNVLADIQKEDDTLVEGWVFCRKCEKVLKYTTRQTSNLCRHKCCASLKQSREL
KTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAEYGEHVNVEELLPSPITLSRKVTSDAKEKKALIS
REIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSI
KFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTY
TMLRSILDNWESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSPSLCFVVPSILKVKEICSPDVGDV
ADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCLSKMEDPVCPSDEFEFYRKEIVILSEDFK
VMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYKNFCK

The query sequence (length=550) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8edg:A 550 550 1.0000 1.0000 1.0000 0.0 6dww:A, 6dwy:A, 6dwz:A, 6dwz:E, 6dx0:A, 8eb5:A, 8edg:C, 8edg:I, 8edg:E, 8edg:G, 8edg:K, 8sjd:C, 8sjd:D, 8sjd:B, 8sjd:A
2 4d1q:H 509 509 0.8545 0.9234 0.9234 0.0 4d1q:A, 4d1q:B, 4d1q:G
3 8b6f:AS 172 56 0.0327 0.1047 0.3214 1.3 8bqs:AS, 8gym:a6, 8gym:A6, 7tgh:A6
4 8dty:A 4004 88 0.0345 0.0047 0.2159 2.4 8dty:B, 8dty:C, 8dty:D
5 6mcw:A 446 110 0.0400 0.0493 0.2000 2.7 7jj1:A, 7jj1:B, 7jj1:C, 6mi0:A, 7snm:A, 7snm:B, 7snm:C, 7snm:D
6 2hxs:A 178 78 0.0455 0.1404 0.3205 4.0 3e5h:A
7 3tqc:B 305 57 0.0291 0.0525 0.2807 4.7 3tqc:A
8 8eiz:A 315 125 0.0509 0.0889 0.2240 7.2 8eiz:B, 8eiz:C, 8eiz:D, 8eiz:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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