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BioLiP
>protein
MDLLKRHLAPIVPDAWSAIDEEAKEIFQGHLAGRKLVDFRGPFGWEYAAVNTGELRPIDDTPEDVDMKLRQVQPLAEVRV
PFTLDVTELDSVARGATNPDLDDVARAAERMVEAEDSAIFHGWAQAGIKGIVDSTPHEALAVASVSDFPRAVLSAADTLR
KAGVTGPYALVLGPKAYDDLFAATQDGYPVAKQVQRLVVDGPLVRANALAGALVMSMRGGDYELTVGQDLSIGYAFHDRS
KVELFVAESFTFRVLEPGAAVHLRYA

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7oe2:A 266 266 1.0000 1.0000 1.0000 0.0 7oe2:B, 7oe2:C, 7oe2:D, 7oe2:E, 7oeu:A, 7oeu:B, 7oeu:C, 7oeu:D, 7oeu:E
2 7kq5:A 265 265 0.3835 0.3849 0.3849 4.90e-67 3dkt:A, 3dkt:B, 3dkt:C, 3dkt:D, 3dkt:E, 3dkt:F, 3dkt:G, 3dkt:H, 3dkt:I, 3dkt:J, 7lik:A, 7lis:A, 7lit:A, 7mu1:A, 6wkv:A, 6wkv:f, 6wkv:B, 6wkv:Q, 6wkv:C, 6wkv:I, 6wkv:D, 6wkv:H, 6wkv:s, 6wkv:E, 6wkv:v, 6wkv:F, 6wkv:W, 6wkv:G, 6wkv:V, 6wkv:o, 6wkv:P, 6wkv:J, 6wkv:3, 6wkv:M, 6wkv:Z, 6wkv:S, 6wkv:N, 6wkv:i, 6wkv:O, 6wkv:l, 6wkv:e, 6wkv:R, 6wkv:T, 6wkv:p, 6wkv:2, 6wkv:X, 6wkv:8, 6wkv:Y, 6wkv:b, 6wkv:0, 6wkv:4, 6wkv:L, 6wkv:1, 6wkv:5, 6wkv:k, 6wkv:K, 6wkv:6, 6wkv:c, 6wkv:7, 6wkv:U, 6wkv:a, 6wkv:9, 6wkv:q, 6wkv:j, 6wkv:d, 6wkv:x, 6wkv:u, 6wkv:h, 6wkv:m, 6wkv:t, 6wkv:g, 6wkv:n, 6wkv:w, 6wkv:r
3 8u51:A 267 264 0.4173 0.4157 0.4205 1.88e-64
4 8vjo:B 278 280 0.2594 0.2482 0.2464 1.13e-11 9b9q:A, 9b9q:B, 9b9q:C, 7s2t:A, 7s2t:B, 7s2t:C, 7s4q:A, 7s4q:B, 7s4q:C, 8tk7:B, 8tk7:A, 8tk7:C, 8vjo:A, 8vjo:C
5 6nj8:B 277 269 0.2068 0.1986 0.2045 5.55e-08 6nj8:C, 6nj8:D
6 6s8r:A 167 78 0.0677 0.1078 0.2308 1.1
7 4xkm:A 435 91 0.0977 0.0598 0.2857 1.2 4xkm:B, 4xkm:C, 4xkm:D, 4xkm:E, 4xkm:F, 4xkm:G, 4xkm:H
8 3goc:A 228 31 0.0489 0.0570 0.4194 6.1 3goc:B
9 1m33:A 256 85 0.0977 0.1016 0.3059 6.2 4etw:C, 4etw:A
10 8e96:D 691 68 0.0940 0.0362 0.3676 9.3 8e96:B
11 2vd8:A 387 36 0.0602 0.0413 0.4444 9.8 2vd8:B, 2vd9:A, 2vd9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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