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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDLDVITTVVKIEGKLRNETLLRVGKGKTQDFAEATDNPIIKYRDRPLIPGSSLKGAFRSLVESYTKSLNDSKYYVCDLD
DNSCVSCEEKKKIVEGRYCIPCILFGFKDLASRVYILDAIAEKYSISQRTMVAINRVFGGQMPGHLYTLDYVDPGSEFSF
MMMIYNLNLIEGEKDWKAKSVEALKFLLATLVREGIFVGARKSVGYGLIKLVDAKVSLYKAPDHLVSPVIVKKLEEVI

The query sequence (length=238) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bmw:F 239 238 0.9874 0.9833 0.9874 1.55e-172 8bmw:G
2 8bmw:H 275 238 0.3067 0.2655 0.3067 1.44e-20 8bmw:I
3 6mur:D 287 239 0.2773 0.2300 0.2762 5.35e-09 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
4 8x5d:K 235 218 0.2311 0.2340 0.2523 1.94e-05 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
5 8bmw:L 201 159 0.1723 0.2040 0.2579 2.18e-05
6 8do6:E 205 161 0.1849 0.2146 0.2733 3.24e-05 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
7 8s9u:D 518 220 0.2605 0.1197 0.2818 2.48e-04 8s9t:D, 8s9v:D, 8s9x:D
8 6ifn:F 220 55 0.0924 0.1000 0.4000 0.001 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
9 8bmw:N 251 259 0.2605 0.2470 0.2394 0.002
10 9ash:H 214 178 0.2269 0.2523 0.3034 0.002 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
11 4qts:C 186 187 0.2269 0.2903 0.2888 0.002 4qts:D
12 4n0l:A 335 66 0.0966 0.0687 0.3485 0.013 4n0l:B
13 6muu:F 323 22 0.0630 0.0464 0.6818 0.17
14 6o7e:Y 361 22 0.0630 0.0416 0.6818 0.17 6o7h:F, 6o7i:F
15 6mur:F 377 23 0.0630 0.0398 0.6522 0.19 6iqw:F, 6mus:F, 6mut:F
16 9ash:J 311 28 0.0672 0.0514 0.5714 0.50 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
17 6ifr:H 353 25 0.0546 0.0368 0.5200 0.62 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
18 7xss:B 1282 72 0.1008 0.0187 0.3333 0.74 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
19 7uzw:E 184 165 0.1765 0.2283 0.2545 0.74 7uzx:E
20 4dzh:A 439 77 0.0714 0.0387 0.2208 1.3
21 7y84:A 1242 79 0.1050 0.0201 0.3165 1.4 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
22 7y80:A 1218 79 0.1050 0.0205 0.3165 1.5 8gu6:A
23 7y8t:A 1298 81 0.0966 0.0177 0.2840 1.9 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
24 2w90:B 471 57 0.0714 0.0361 0.2982 4.0 2w8z:A, 2w8z:B, 2w90:A
25 7x4n:E 332 62 0.0714 0.0512 0.2742 4.3
26 8d8n:B 1256 83 0.1008 0.0191 0.2892 5.1 8d9e:B, 8d9i:B, 7y81:A
27 6s6b:J 475 67 0.0840 0.0421 0.2985 5.5 6s8b:J, 6s8e:J, 6s91:J, 6sh8:J, 6shb:J, 6sic:J
28 8of1:A 505 38 0.0630 0.0297 0.3947 7.4 8of1:B, 8ofm:A, 8ofm:B
29 8bmw:J 270 92 0.1008 0.0889 0.2609 8.3
30 8gna:A 1188 76 0.1050 0.0210 0.3289 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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