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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDKKAREYAQDALKFIQRSGSNFLACKNLKERLENNGFINLSEGETWNLNKNEGYVLCKENRNICGFFVGKNFNIDTGSI
LISIGHIDSCALKISPNNNVIKKKIHQINVECYGSGLWHTWFDRSLGLSGQVLYKKGNKLVEKLIQINKSVLFLPSLAIH
LQNRTRYDFSVKINYENHIKPIISTTLFNQLNKCKINTDNSYPLLYLLSKELNCKEEDILDFELCLMDTQEPCFTGVYEE
FIEGARFDNLLGSFCVFEGFIELVNSIKNHTNDNIHNNLYISIGYDHEEIGSLSEVGARSYCTKNFIDRIISSVFKKEIH
EKNLSVQEIYGNLVNRSFILNVDMAHCSHPNYPETVQDNHQLFFHEGIAIKYNTNKNYVTSPLHASLIKRTFELYYNKYK
QQIKYQNFMVKNDTPCGSTVGSMVAANLSMPGIDIGIPQLAMHSIREIAAVHDVFFLIKGVFAFYTYYNQVLSTCVHD

The query sequence (length=478) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pev:A 478 478 1.0000 1.0000 1.0000 0.0 4eme:A, 4eme:B, 4eme:C, 4eme:D, 6pev:B, 6pev:C, 6pev:D, 6pev:E, 6pev:F, 6pev:G, 6pev:H, 6pev:I, 6pev:J, 6pev:K, 6pev:L
2 3vat:A 458 469 0.3368 0.3515 0.3433 4.89e-91 4dyo:A
3 7u5h:A 422 469 0.3159 0.3578 0.3220 7.96e-77 7u5h:B, 7u5h:C, 7u5h:D, 7u5h:E, 7u5h:F, 7u5h:G, 7u5h:H, 7u5h:I, 7u5h:J, 7u5h:K, 7u5h:L, 3var:A
4 7dde:A 525 479 0.3285 0.2990 0.3278 5.92e-73 7dde:C, 7dde:E, 7dde:G, 7dde:I, 7dde:K, 7dde:M, 7dde:O, 7dde:Q, 7dde:S, 7dde:V, 7dde:X
5 4njr:A 425 460 0.2845 0.3200 0.2957 5.94e-67 4njq:A, 4njq:B, 4njq:C, 4njq:D, 4njr:B, 4njr:C, 4njr:D, 4oiw:A, 4oiw:B, 4oiw:C, 4oiw:D, 4oiw:E, 4oiw:F, 3wt4:A, 3wt4:B, 3wt4:C, 3wt4:D
6 5jh9:B 477 477 0.2657 0.2662 0.2662 2.86e-43 5jgf:A, 5jgf:B, 5jgf:C, 5jgf:D, 5jh9:A, 5jh9:C, 5jh9:D
7 5jm6:A 445 482 0.2615 0.2809 0.2593 7.02e-42 5jm6:E, 5jm6:F, 5jm6:B, 5jm6:C, 5jm6:D
8 2glj:A 456 464 0.2197 0.2303 0.2263 4.51e-14 2glj:B, 2glj:C, 2glj:D, 2glj:E, 2glj:F, 2glj:G, 2glj:H, 2glj:I, 2glj:J, 2glj:K, 2glj:L, 2glj:M, 2glj:N, 2glj:O, 2glj:P, 2glj:Q, 2glj:R, 2glj:S, 2glj:T, 2glj:U, 2glj:V, 2glj:W, 2glj:X
9 2glf:A 450 459 0.2134 0.2267 0.2222 8.45e-12 2glf:B, 2glf:C, 2glf:D
10 3eut:A 379 72 0.0335 0.0422 0.2222 0.74 3eut:C
11 3aty:A 379 54 0.0377 0.0475 0.3333 2.7 3aty:B, 3atz:A, 3atz:B, 3atz:C, 3atz:D, 4e2b:A, 4e2d:A, 4e2d:B, 4e2d:C, 4e2d:D
12 5llw:B 673 114 0.0565 0.0401 0.2368 2.8 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
13 7pnt:X 357 95 0.0565 0.0756 0.2842 6.1 7pnu:X, 7pnv:X, 7pnw:X
14 7dn3:A 1293 74 0.0418 0.0155 0.2703 6.6 7du2:A
15 7ywk:A 401 42 0.0272 0.0324 0.3095 7.0 5n81:A, 5n81:B, 5n82:A, 7ywk:B
16 3q1e:D 116 54 0.0377 0.1552 0.3333 7.1 3q1e:A, 3q1e:C, 3q1e:B
17 7p1y:AAA 174 29 0.0293 0.0805 0.4828 7.1 7p1y:BBB, 7p1y:DDD, 7p1y:CCC
18 3tos:B 257 129 0.0607 0.1128 0.2248 7.9 4gf5:A, 4gf5:C, 4gf5:E, 4gf5:F, 4gf5:H, 4gf5:B, 4gf5:D, 4gf5:G, 4gf5:I, 4gf5:J, 4gf5:K, 4gf5:L, 4gf5:M, 4gf5:N, 4gf5:O, 4gf5:P, 4gf5:Q, 4gf5:R, 4gf5:S, 4gf5:T, 3tos:A, 3tos:C, 3tos:D, 3tos:E, 3tos:F, 3tos:G, 3tos:H, 3tos:I, 3tos:J
19 3b1v:A 264 74 0.0397 0.0720 0.2568 8.2 3b1w:A, 3b1w:B, 3b1w:C, 3b1w:D, 3b1x:A, 3b1x:B, 3b1y:A, 7bvu:A, 7bvu:B, 7bwv:A, 7bwv:B, 3lx5:A, 3lx8:A, 4non:A, 4non:B, 3ss8:A, 3ss8:B, 3tah:A, 3tah:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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