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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDKIITGKKIIFSQSVAKDQTKNLSSFLSERFYSVNQSHNHSIIIGSSLSHQENDIEHDTILDTSGVLVTTDTNGIVNGA
RVAITDGLGGGDQEEDDEIYRVSHSSCENFLNSDQNIDTTLSLITQHTEASMAAFIYQNHPGKGYIGEFANIGDGLIIIL
DKRFKIKHMVSASHIYRGFGTWTPPSLQALATTANKDALLVRQTLKLAEGDIIISMTDGVWGELKTSLIAQTNDRRDIGV
DKEYFKTLFDELTDAPYPSSFDIARIITQRAMSRSLERRKTLIKLINEIEQQHFHEKSVKTINEVLEYFIKTGHVETAQT
LKAILFEDGLSDGITYFENIEIPLEMVMHDLKSRCVGDCSTINVTRIPYHLDELIRGFINYPEKHQILAPLFKARVKSEA
DLEEAFHRLSLEMVQPEIESPISETHFERAFKKETLDKTQAVLTHYF

The query sequence (length=447) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8anp:B 454 450 0.9843 0.9692 0.9778 0.0
2 8agg:A 489 448 0.9463 0.8650 0.9442 0.0 8alk:A, 8anp:C
3 8anp:A 417 448 0.9083 0.9736 0.9062 0.0
4 8anp:D 391 287 0.6242 0.7136 0.9721 0.0
5 8anp:D 391 102 0.2215 0.2532 0.9706 1.47e-64
6 6ku3:B 318 122 0.0716 0.1006 0.2623 0.39 6ku3:A, 6ku3:D, 6ku3:C
7 6sd8:X 503 57 0.0358 0.0318 0.2807 1.2 6sd8:A, 6sda:A, 6sda:B
8 5dtu:A 404 85 0.0447 0.0495 0.2353 4.6
9 3ts3:B 205 58 0.0492 0.1073 0.3793 4.9 3ts3:C, 3ts3:D
10 6sj2:B 503 76 0.0492 0.0437 0.2895 5.5 6sj0:A, 6sj0:B, 6sj1:A, 6sj1:B, 6sj2:A, 6sj3:A, 6sj3:B, 6sj4:A, 6sj4:B
11 7clf:A 335 36 0.0291 0.0388 0.3611 8.9 7clf:B
12 6a8x:A 203 79 0.0492 0.1084 0.2785 9.1 6a8x:B, 6a98:A, 6a98:B, 6a98:C, 6a98:D, 6a99:A, 6a99:B, 6a99:C, 6a99:D, 6a9f:A, 6a9f:B, 6a9f:C, 6a9f:D
13 8ouw:3 619 122 0.0738 0.0533 0.2705 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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