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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDINVVNALAYEDFVKLFGNVVEKCPLISAAIWSYRPFKDLADIEARISEFIHSLPDSGKEGILRCHPDLAGRDLQSGTL
TPESQEEQSQAGMTTLDSAEIVHMYRLNSEYKERFGFPFVICARLNNKADIVRQLSERLKNRRTAELECAIEEVKKICSL
RLHSIVLS

The query sequence (length=168) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2o73:F 168 168 1.0000 1.0000 1.0000 3.77e-125 2o73:A, 2o73:B, 2o73:C, 2o73:D, 2o73:E, 2o74:A, 2o74:B, 2o74:C, 2o74:D, 2o74:E, 2o74:F
2 2q37:A 142 76 0.1964 0.2324 0.4342 2.62e-10
3 3o7j:A 166 164 0.2202 0.2229 0.2256 6.46e-05
4 8rqh:B 382 95 0.1429 0.0628 0.2526 0.21 8rqh:A
5 6o8w:d 201 55 0.1071 0.0896 0.3273 0.69 7nhk:e, 6o8x:d, 6o8y:d, 6o8z:d, 6o90:d, 7p7q:e, 7p7r:e, 7p7s:e, 7p7t:e, 7p7u:e, 6w6p:d, 6wub:d
6 2dq7:X 263 76 0.1250 0.0798 0.2763 1.4
7 6hl7:C 322 88 0.1548 0.0807 0.2955 1.6
8 7rk5:B 501 35 0.0774 0.0259 0.3714 3.0 7rk5:A
9 6m9m:A 207 89 0.1190 0.0966 0.2247 3.4
10 3vu1:B 490 77 0.1310 0.0449 0.2857 3.8 3vu1:A
11 4wjw:B 673 33 0.0833 0.0208 0.4242 4.0
12 8w2h:A 761 48 0.0714 0.0158 0.2500 4.5 7lw1:A, 7lw1:D, 7lw1:E, 7lw1:F, 8w2g:A, 8w2g:B, 8w2g:D, 8w2g:C, 8w2h:B, 8w2h:C, 8w2h:D, 8w2j:E, 8w2j:F, 8w2j:G, 8w2j:H, 8w2j:A, 8w2j:B, 8w2j:C, 8w2j:D
13 4bjz:A 395 35 0.0655 0.0278 0.3143 4.7 4bjy:A, 4bk1:A, 4bk2:A, 4bk3:A, 5hym:A
14 4aw2:A 398 44 0.0833 0.0352 0.3182 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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