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BioLiP
>protein
MDILLVCLRFPFFSVAKRSYQVRTSFLLPPPSALKGALAKGLILLKPEKYASSSLDEAALKAIKEIESKLVDIKAVSVAP
LSPLIRNAFLLKRLRNLESGSNAEKSDAMRREYTFTRELLVAYIFKNLTQEEKNLYLKAAMLIDVIGDTESLATPVWASF
VKPEDKKAPLAFSAPYTEIYSLRMYIEKMRVSPEYSQEEIFYLPIEERRYKRIVYYARIYPPEVEKALTVDGEVLGIWIP

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r21:P 240 240 1.0000 1.0000 1.0000 1.33e-173 7r2k:S, 7tr6:P, 7tr8:P, 7tr9:P, 7tra:O
2 6tnn:I 134 36 0.0542 0.0970 0.3611 2.7 6tnn:H
3 7qug:A 397 82 0.0792 0.0479 0.2317 6.5
4 7oq4:E 72 40 0.0708 0.2361 0.4250 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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