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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDHYLDIRLRPDPEFPPAQLMSVLFGKLHQALVAQGGDRIGVSFPDLDESRSRLGERLRIHASADDLRALLARPWLEGLR
DHLQFGEPAVVPHPTPYRQVSRVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARTLDLPFVTLRSQSTGQHFRLFIR
HGPLQATAEEGGFTCYGLSKGGFVPWF

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4al5:A 189 187 0.9840 0.9735 0.9840 9.78e-134 6b44:L, 6b45:L, 6b46:L, 6b47:L, 6b48:L, 7ecv:L, 7elm:I, 7elm:S, 7eln:I, 7eln:S, 7eqg:L, 7jzw:C, 7jzx:C, 7jzy:C, 7jzz:C, 6ne0:L, 7t3j:C, 7t3k:C, 7t3k:c, 7t3l:C, 7t3l:c, 7taw:C, 7taw:c, 7tax:C, 5uz9:L, 6vqv:K, 6vqx:J, 6w1x:L, 7we6:I, 7we6:S, 6whi:L, 2xlj:A, 2xlk:A, 2xlk:B, 7yhs:L
2 2xli:A 167 187 0.8770 0.9820 0.8770 1.64e-111 4al6:A, 4al7:A
3 5o6u:B 182 186 0.3690 0.3791 0.3710 4.95e-33
4 7wkp:A 167 160 0.2299 0.2575 0.2687 3.09e-11 8k0k:I, 8k22:H, 8k23:H, 8k23:h, 8k24:h, 8k24:H, 8k27:I, 8k28:I, 8k29:I, 7wwu:I
5 5o7h:B 129 168 0.2567 0.3721 0.2857 7.40e-11
6 5j32:A 369 54 0.1016 0.0515 0.3519 1.9 5j32:B, 5j32:C, 5j32:D, 5j33:A, 5j33:B, 5j33:C, 5j33:H, 5j33:D, 5j33:F, 5j33:E, 5j33:G, 5j34:A, 5j34:B, 5j34:C, 5j34:D
7 1vpe:A 398 69 0.1176 0.0553 0.3188 3.1
8 2eo5:A 412 28 0.0535 0.0243 0.3571 3.4
9 3vkz:A 364 70 0.1123 0.0577 0.3000 4.4 3vl2:A, 3vl3:A, 3vl4:A, 3vl6:A, 3vl7:A, 3vmj:A, 3wzv:A, 3wzw:A, 3wzx:A, 3wzy:A
10 2v7y:A 504 41 0.0749 0.0278 0.3415 4.5
11 6sa8:A 665 50 0.0909 0.0256 0.3400 5.8 7dne:B, 5mfg:C, 5mfg:D, 5mfg:B
12 7vno:A 452 27 0.0535 0.0221 0.3704 6.5 7vno:B, 7vnt:A, 7vnt:B, 7vo1:A, 7vo1:B
13 4qvt:D 146 46 0.0695 0.0890 0.2826 7.4 2pdo:H, 2pdo:B, 4qvt:A, 4qvt:B, 4qvt:C, 4qvt:E, 4qvt:F, 4qvt:G, 4qvt:H
14 5mcp:E 387 54 0.0963 0.0465 0.3333 7.8 5mcp:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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