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BioLiP
>protein
MDGEEVKEKIRRYIMEDLIGPSAKEDELDDQTPLLEWGILNSMNIVKLMVYIRDEMGVSIPSTHITGKYFKDLNAISRTV
EQLKAESALE

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2n5h:A 90 90 1.0000 1.0000 1.0000 2.22e-62 2n5i:A, 6o6e:E
2 5jdx:A 89 64 0.2556 0.2584 0.3594 3.71e-06 7thn:E
3 5kp8:B 78 67 0.1889 0.2179 0.2537 0.78
4 4q0z:A 322 56 0.1667 0.0466 0.2679 1.3 4q0w:A, 4q0z:B, 4q0z:E, 4q0z:F
5 3fei:A 246 53 0.1667 0.0610 0.2830 2.7
6 6lx5:A 273 53 0.1667 0.0549 0.2830 5.2 5azt:A, 5azt:B, 4bcr:A, 4bcr:B, 7bpy:A, 7bpy:C, 7bpz:A, 7bpz:C, 7bq0:A, 7bq0:C, 7bq1:A, 7bq2:A, 7bq3:A, 7bq4:A, 7c6q:A, 4ci4:A, 7e5f:A, 7e5g:A, 7e5h:A, 7e5i:A, 3et1:A, 3et1:B, 3g8i:A, 8huk:A, 8huk:C, 8hun:A, 8huq:A, 5hyk:A, 1i7g:A, 1k7l:A, 1k7l:C, 1k7l:E, 1k7l:G, 6kax:A, 6kay:A, 6kaz:A, 6kb0:A, 6kb1:A, 6kb2:A, 6kb3:A, 6kb4:A, 6kb5:A, 6kb6:A, 6kb7:A, 6kb8:A, 6kb9:A, 6kba:A, 3kdt:A, 3kdt:B, 3kdu:A, 3kdu:B, 1kkq:A, 1kkq:B, 1kkq:C, 1kkq:D, 6kxx:A, 6kxy:A, 6kyp:A, 6kyp:B, 6l36:A, 6l36:B, 6l37:A, 6l37:B, 6l38:A, 6l38:B, 6l96:A, 6l96:B, 6lx4:A, 6lx4:B, 6lx5:B, 6lx6:A, 6lx7:A, 6lx8:A, 6lx9:A, 6lxa:A, 6lxb:A, 6lxc:A, 2npa:A, 2npa:C, 2p54:A, 2rew:A, 3sp6:A, 3vi8:A, 2znn:A
7 7bkb:G 568 15 0.1222 0.0194 0.7333 6.9 7bkb:g, 7bkc:G, 7bkc:g
8 2gn4:A 329 43 0.1556 0.0426 0.3256 8.1 2gn4:B, 2gn6:A, 2gn6:B, 2gn8:A, 2gn8:B, 2gn9:A, 2gn9:B, 2gna:A, 2gna:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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