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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLR
ECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3iew:A 160 159 1.0000 0.9938 1.0000 2.81e-113 3f0d:A, 3f0d:C, 3f0d:D, 3f0d:E, 3f0d:F, 3f0e:A, 3f0e:B, 3f0e:C, 3f0f:A, 3f0f:B, 3f0f:C, 3f0g:A, 3f0g:B, 3f0g:C, 3f0g:D, 3f0g:E, 3f0g:F, 3ieq:A, 3ieq:C, 3ieq:B, 3iew:C, 3iew:B, 3ike:A, 3ike:B, 3ike:C, 3ikf:A, 3ikf:B, 3ikf:C, 3jvh:A, 3jvh:B, 3jvh:C, 3k14:A, 3k14:B, 3k14:C, 3k2x:C, 3k2x:B, 3ke1:A, 3ke1:B, 3ke1:C, 5l03:A, 5l03:B, 5l03:C, 5l12:A, 5l12:B, 5l12:C, 3mbm:A, 3mbm:C, 6mwf:A, 6mwf:B, 6mwf:C, 6mwi:A, 6mwi:B, 6mwi:C, 6mwj:A, 6mwj:B, 6mwj:C, 6mwk:A, 6mwk:B, 6mwk:C, 6nmo:A, 6nmo:B, 6nmo:C, 3p0z:A, 3p0z:C, 3p0z:B, 3p10:A, 3p10:C, 3p10:B, 3q8h:A, 3q8h:B, 3q8h:C, 3qhd:A, 3qhd:C, 3qhd:B, 6v3m:A, 6v3m:B, 6v3m:C
2 4c8e:A 161 159 0.8868 0.8758 0.8868 3.65e-100 4c8e:C, 4c8e:B, 4c8g:A, 4c8g:C, 4c8g:B, 4c8i:A, 4c8i:B, 4c8i:C, 3f0d:B, 3k2x:A, 3mbm:B
3 5iwx:A 158 156 0.6038 0.6076 0.6154 6.49e-67 5iwx:B, 5iwx:C, 5iwx:D, 5iwx:E, 5iwx:F, 5iwy:A, 5iwy:C, 5iwy:B, 5iwy:D, 5iwy:E, 5iwy:F
4 5b8f:C 164 155 0.6038 0.5854 0.6194 6.45e-66 5b8f:A, 5b8f:B
5 1jn1:A 157 156 0.6038 0.6115 0.6154 1.02e-64 1jn1:B, 1jn1:C, 1vh8:A, 1vh8:B, 1vh8:C, 1vh8:D, 1vh8:E, 1vh8:F, 1vha:A, 1vha:B, 1vha:C, 1vha:D, 1vha:E, 1vha:F
6 3fpi:A 161 158 0.6164 0.6087 0.6203 9.49e-64
7 1t0a:A 158 157 0.5723 0.5759 0.5796 5.89e-62 1t0a:B, 1t0a:C
8 3esj:A 162 158 0.6226 0.6111 0.6266 1.66e-61 2amt:A, 2amt:B, 2amt:C, 2amt:D, 2amt:F, 2amt:E, 3elc:A, 3elc:B, 3elc:C, 3eor:A, 3ern:A, 3ern:B, 3ern:C, 3ern:D, 3ern:E, 3ern:F, 3fba:A, 3ghz:A, 3ghz:B, 3ghz:C, 1gx1:A, 1gx1:C, 1gx1:B, 2gzl:A, 1h47:A, 1h47:B, 1h47:C, 1h47:D, 1h47:E, 1h47:F, 1h48:A, 1h48:F, 1h48:C, 1h48:B, 1h48:D, 1h48:E, 1jy8:A, 1knj:A, 1knk:A, 3t80:A, 3t80:B, 3t80:C, 3t80:D, 3t80:E, 3t80:F, 1u3l:A, 1u3p:A, 1u40:A, 1u43:A, 1yqn:A
9 2pmp:A 160 159 0.4591 0.4562 0.4591 2.77e-49
10 1w55:A 369 143 0.4528 0.1951 0.5035 1.47e-44 1w57:A
11 3re3:B 144 159 0.4465 0.4931 0.4465 7.19e-44
12 8xkf:C 377 151 0.3774 0.1592 0.3974 7.10e-36 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
13 5esv:G 187 124 0.4340 0.3690 0.5565 1.73e-34 5esv:E, 5esv:F
14 1iv2:A 150 136 0.3711 0.3933 0.4338 4.15e-31 1iv2:C, 1iv2:B, 1iv2:D, 1iv2:F, 1iv2:E, 1iv3:A, 1iv3:B, 1iv3:C, 1iv3:D, 1iv3:E, 1iv3:F, 1iv4:A, 1iv4:B, 1iv4:C, 1iv4:D, 1iv4:E, 1iv4:F
15 3b6n:A 150 164 0.3774 0.4000 0.3659 2.11e-25
16 2uzh:C 155 145 0.3396 0.3484 0.3724 1.90e-24 2uzh:A, 2uzh:B
17 4c81:A 156 158 0.3585 0.3654 0.3608 7.50e-24 4c82:A
18 8sq0:A 1402 36 0.1006 0.0114 0.4444 0.56 8sq0:B, 8sql:A, 8sqm:A
19 8jjr:r 131 61 0.1132 0.1374 0.2951 0.64
20 2uz9:A 444 69 0.1258 0.0450 0.2899 0.67 4aql:A, 3e0l:A, 3e0l:B
21 7pkt:N 283 119 0.1950 0.1095 0.2605 0.79
22 5wlw:D 128 76 0.1321 0.1641 0.2763 1.2
23 1wfz:A 130 76 0.1321 0.1615 0.2763 1.7 6nzu:D, 6nzu:H, 8pk8:D, 8pk9:D, 8pka:D, 5wlw:H
24 6t6f:A 288 97 0.1509 0.0833 0.2474 4.6 8bfm:A, 8bfs:A, 2jc6:A, 2jc6:C, 6t28:AAA, 6t29:AAA, 6t6f:B
25 7ezx:e2 248 45 0.0881 0.0565 0.3111 6.1 7ezx:eR, 6kgx:e3, 6kgx:eD, 7y4l:eK, 7y4l:e1, 7y5e:eA, 7y5e:e7, 7y7a:eD, 7y7a:e5, 7y7a:eg, 7y7a:ei
26 8f4b:A 1182 24 0.0755 0.0102 0.5000 6.9
27 6bhu:A 1328 24 0.0755 0.0090 0.5000 6.9 5uja:A, 6uy0:A
28 7ezi:A 323 25 0.0629 0.0310 0.4000 8.4 7ezl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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