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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDFNLTEDQQMIKDMAAEFAEKFLAPTVEERDKAHIWDRKLIDKMGEAGFCGICFPEEYGGMGLDVLSYILAVEELSKVD
DGTGITLSANVSLCATPIYMFGTEEQKQKYLAPIAEGTHVGAFGLTEPSAGTDASAQQTTAVLKGDKYILNGSKIFITNG
KEADTYVVFAMTDKSQGVHGISAFILEKGMPGFRFGKIEDKMGGHTSITAELIFEDCEVPKENLLGKEGEGFKIAMETLD
GGRIGVAAQALGIAEGALAAAVKYSKEREQFGRSISKFQALQFMMADMATKIEAARYLVYHAAMLKNEGKPYSEAAAMAK
CFASDVAMEVTTDAVQIFGGYGYTVDYPAERYMRNAKITQIYEGTNQVMRIVTSRALLRD

The query sequence (length=380) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4l1f:A 380 380 1.0000 1.0000 1.0000 0.0 4l1f:B
2 1buc:A 383 383 0.6684 0.6632 0.6632 4.93e-172 1buc:B
3 5ol2:F 378 379 0.6289 0.6323 0.6306 6.01e-169 5ol2:C
4 5lnx:D 374 373 0.5474 0.5561 0.5576 5.89e-144 5lnx:A, 5lnx:B, 5lnx:C, 5lnx:E, 5lnx:F, 5lnx:G, 5lnx:H
5 7y0a:C 387 376 0.4816 0.4729 0.4867 1.12e-125 1jqi:A, 1jqi:B, 8sgs:A, 8sgs:B, 8sgs:C, 8sgs:D, 2vig:A, 2vig:B, 2vig:C, 2vig:D, 2vig:E, 2vig:F, 2vig:G, 2vig:H, 7y0a:A, 7y0a:B, 7y0a:D, 7y0b:A, 7y0b:B, 7y0b:C, 7y0b:D
6 4n5f:A 378 378 0.4868 0.4894 0.4894 3.13e-122 4n5f:B
7 1ukw:A 379 378 0.4526 0.4538 0.4550 2.91e-119 1ukw:B
8 3pfd:C 369 361 0.4684 0.4824 0.4931 4.94e-117 3pfd:A, 3pfd:B, 3pfd:D
9 4m9a:B 376 373 0.4711 0.4761 0.4799 5.81e-115 4m9a:A
10 6fah:D 379 376 0.4684 0.4697 0.4734 6.15e-114 6fah:C
11 7p9a:A 380 377 0.4658 0.4658 0.4695 3.37e-108 7p98:A, 7p98:B, 7p9a:B, 7p9x:A, 7p9x:B, 7p9x:C, 7p9x:D
12 7w0j:E 382 384 0.4579 0.4555 0.4531 3.68e-108 8i4p:A, 8i4r:A, 7w0j:B, 7w0j:C, 7w0j:H
13 2dvl:A 370 375 0.4526 0.4649 0.4587 1.23e-102 2dvl:B
14 7szv:A 372 375 0.4263 0.4355 0.4320 2.52e-102 7szv:B
15 2jif:A 381 365 0.4026 0.4016 0.4192 3.56e-96 2jif:C, 2jif:B, 2jif:D
16 8sgr:A 393 380 0.3921 0.3791 0.3921 1.00e-94 1ivh:A, 1ivh:B, 1ivh:C, 1ivh:D, 8sgr:B, 8sgr:C, 8sgr:D
17 3mdd:A 385 378 0.4026 0.3974 0.4048 1.70e-92 3mdd:B, 3mde:A, 3mde:B, 1udy:A, 1udy:B, 1udy:C, 1udy:D
18 1rx0:A 384 377 0.3974 0.3932 0.4005 7.90e-92 1rx0:C, 1rx0:B, 1rx0:D
19 2a1t:C 388 376 0.4053 0.3969 0.4096 1.30e-89 2a1t:A, 2a1t:B, 2a1t:D, 1egc:A, 1egc:B, 1egc:C, 1egc:D, 1egd:A, 1egd:B, 1egd:C, 1egd:D, 1ege:A, 1ege:B, 1ege:C, 1ege:D, 4p13:A, 4p13:B, 4p13:C, 4p13:D, 8sgp:A, 8sgp:B, 8sgp:C, 8sgp:D, 1t9g:A, 1t9g:B, 1t9g:C, 1t9g:D
20 3nf4:A 369 364 0.3921 0.4038 0.4093 4.18e-89 3nf4:B
21 2d29:A 386 378 0.4289 0.4223 0.4312 6.77e-88 2d29:B
22 4kto:A 377 378 0.3921 0.3952 0.3942 9.33e-86 4kto:C, 4kto:B, 4kto:D
23 3mpi:C 395 379 0.3868 0.3722 0.3879 8.17e-84 3mpi:A, 3mpi:B, 3mpi:D, 3mpj:B, 3mpj:A, 3mpj:D, 3mpj:E, 3mpj:F, 3mpj:G
24 4iv6:B 383 380 0.3868 0.3838 0.3868 1.51e-81 4iv6:A
25 2pg0:A 380 377 0.3947 0.3947 0.3979 1.46e-78 2pg0:B
26 2z1q:B 549 395 0.4132 0.2860 0.3975 2.58e-78 2z1q:A
27 4irn:A 378 372 0.3395 0.3413 0.3468 6.94e-76 4irn:B, 4irn:C, 4irn:D, 4irn:E, 4irn:F, 4irn:G, 4irn:H
28 8phe:A 551 365 0.3895 0.2686 0.4055 1.00e-75 8phe:B, 8phf:A, 8phf:B
29 3owa:C 587 399 0.3947 0.2555 0.3759 3.31e-73 3owa:A, 3owa:B, 3owa:D
30 3gqt:C 385 376 0.3553 0.3506 0.3590 2.39e-71 3d6b:C, 3eon:C, 3gnc:A, 3gnc:B, 3gnc:C, 3gnc:D, 3gqt:A, 3gqt:B
31 7s7g:A 571 379 0.3816 0.2539 0.3826 8.52e-71 3b96:A, 2uxw:A
32 5idu:C 405 344 0.3526 0.3309 0.3895 1.49e-70 5idu:A, 5idu:B, 5idu:D
33 5jsc:A 388 344 0.3421 0.3351 0.3779 1.14e-66 5jsc:B, 5jsc:C, 5jsc:D
34 3r7k:A 378 375 0.3447 0.3466 0.3493 4.23e-66 3r7k:B, 3r7k:C, 3r7k:D
35 8w0t:A 398 378 0.3263 0.3116 0.3280 4.91e-66 8w0t:B, 8w0t:C, 8w0t:D, 8w0u:A, 8w0u:B, 8w0u:C, 8w0u:D, 8w0z:A, 8w0z:B, 8w0z:C, 8w0z:D, 8w0z:E, 8w0z:F, 8w0z:G, 8w0z:H
36 6af6:A 383 379 0.3263 0.3238 0.3272 3.89e-65 5zw2:A, 5zw7:A, 5zw8:A
37 8ca1:B 589 379 0.3500 0.2258 0.3509 3.48e-64 8ca1:A
38 2r0m:A 390 376 0.3289 0.3205 0.3324 6.91e-63 2r0n:A, 1siq:A, 1sir:A
39 2eba:A 380 371 0.3316 0.3316 0.3396 1.61e-61 2eba:D, 2eba:C, 2eba:E, 2eba:F, 2eba:G, 2eba:H, 2eba:I
40 6es9:A 545 386 0.3500 0.2440 0.3446 3.08e-61 6es9:B
41 5af7:B 391 383 0.3579 0.3478 0.3551 3.69e-61 5af7:A, 5ahs:A, 5ahs:B, 5ahs:C, 5ahs:E, 5ahs:F, 5ahs:D
42 6cxt:B 372 380 0.3105 0.3172 0.3105 4.09e-61 6cy8:B
43 3oib:A 381 380 0.3395 0.3386 0.3395 2.12e-58 3oib:B, 3p4t:A, 3p4t:B
44 3sf6:A 387 374 0.3132 0.3075 0.3182 4.91e-58
45 7xp7:B 376 365 0.3500 0.3537 0.3644 7.90e-58 7xp7:A, 7xp7:C, 7xp7:D
46 3swo:A 388 376 0.3026 0.2964 0.3059 1.47e-54 3swo:D, 3swo:B, 3swo:C
47 2ix6:A 416 375 0.2868 0.2620 0.2907 2.10e-42 2ix5:A, 2ix5:B, 2ix5:C, 2ix5:D, 2ix6:C, 2ix6:F, 2ix6:B, 2ix6:E, 2ix6:D
48 8ciw:A 555 398 0.3158 0.2162 0.3015 5.11e-40 8ciw:B
49 4hr3:A 407 350 0.2605 0.2432 0.2829 1.03e-34
50 6u1v:B 389 351 0.2605 0.2545 0.2821 2.13e-33 6u1v:A, 6u1v:C, 6u1v:D
51 4x28:A 386 384 0.2658 0.2617 0.2630 2.45e-28 4x28:B
52 6wy8:C 364 366 0.2895 0.3022 0.3005 4.33e-28 6wy8:A, 6wy9:B
53 2wbi:B 398 377 0.2526 0.2412 0.2546 4.99e-28 2wbi:A
54 6wy8:B 384 265 0.2053 0.2031 0.2943 2.60e-27 6wy8:D, 6wy9:A
55 3mkh:A 426 410 0.2816 0.2512 0.2610 1.40e-24 3mkh:B, 3mkh:C, 3mkh:D
56 1r2j:A 353 357 0.2447 0.2635 0.2605 4.40e-24
57 6kse:A 607 375 0.2895 0.1812 0.2933 5.13e-24 6kse:B
58 5ez3:B 541 277 0.2105 0.1479 0.2888 1.24e-22 5ez3:A, 5ez3:C, 5ez3:D
59 4x28:D 364 380 0.2737 0.2857 0.2737 2.29e-20 4x28:C
60 3u33:A 540 266 0.1711 0.1204 0.2444 9.34e-18 3djl:A, 3u33:B, 3u33:C, 3u33:D, 3u33:E, 3u33:F, 3u33:G, 3u33:H, 3u33:I, 3u33:J, 3u33:K, 3u33:L
61 4y9j:B 593 269 0.1947 0.1248 0.2751 3.45e-17 4y9j:A, 4y9l:A, 4y9l:B
62 8hk0:B 379 275 0.1947 0.1953 0.2691 4.00e-17 8hk0:A
63 6ksa:B 611 328 0.2342 0.1457 0.2713 3.26e-16 6kpt:A, 6kpt:B, 6kri:A, 6kri:B, 6ks9:A, 6ks9:B, 6ksa:A, 6ksb:A, 6ksb:B, 6lpy:A, 6lpy:B, 6lq0:A, 6lq0:B, 6lq1:A, 6lq1:B, 6lq2:A, 6lq2:B, 6lq3:A, 6lq3:B, 6lq4:A, 6lq4:B, 6lq5:A, 6lq5:B, 6lq6:A, 6lq6:B, 6lq7:A, 6lq7:B, 6lq8:A, 6lq8:B
64 5z8t:A 395 370 0.2316 0.2228 0.2378 6.66e-16 5z8t:B, 5z8t:C
65 4kcf:A 407 354 0.2026 0.1892 0.2175 8.15e-15 3m9v:A
66 4xvx:B 373 364 0.2342 0.2386 0.2445 9.47e-15 4xvx:A
67 3d9d:A 432 412 0.2632 0.2315 0.2427 4.26e-14 2c0u:A, 2c0u:B, 2c0u:C, 2c0u:D, 2c12:A, 2c12:B, 2c12:C, 2c12:D, 2c12:E, 2c12:F, 3d9d:B, 3d9d:C, 3d9d:D, 3d9e:A, 3d9e:B, 3d9e:C, 3d9e:D, 3d9f:A, 3d9f:B, 3d9f:C, 3d9f:D, 3d9g:A, 3d9g:B, 3d9g:C, 3d9g:D, 3fcj:A, 3fcj:B, 3fcj:C, 3fcj:D, 2reh:A, 2reh:B, 2reh:C, 2reh:D, 2zaf:A, 2zaf:B, 2zaf:C, 2zaf:D
68 6sd8:X 503 279 0.1895 0.1431 0.2581 4.85e-14 6sd8:A, 6sda:A, 6sda:B
69 4zyj:D 392 373 0.2237 0.2168 0.2279 2.16e-11 4zyj:A, 4zyj:B, 4zyj:C
70 3x0y:A 402 376 0.2105 0.1990 0.2128 4.43e-11 3x0y:F, 3x0y:C, 3x0y:E, 3x0y:B, 3x0y:D
71 5xdc:B 402 278 0.1895 0.1791 0.2590 7.67e-11 5xdb:A, 5xdb:B, 5xdb:C, 5xdb:D, 5xdc:A, 5xdc:C, 5xdc:D, 5xdd:A, 5xdd:B, 5xdd:C, 5xdd:D, 5xde:A, 5xde:B, 5xde:C, 5xde:D, 5xdg:A, 5xdg:B, 5xdg:C, 5xdg:D
72 7q86:A 612 305 0.1947 0.1209 0.2426 2.89e-10 7q86:B
73 5ys9:A 692 222 0.1447 0.0795 0.2477 1.80e-08 5ys9:B
74 1w07:B 658 201 0.1395 0.0805 0.2637 8.97e-08 1w07:A
75 1is2:A 637 322 0.1921 0.1146 0.2267 1.77e-06 2ddh:A, 1is2:B
76 2fon:B 656 327 0.1816 0.1052 0.2110 2.58e-06 2fon:A, 2fon:C
77 5y9d:A 687 224 0.1474 0.0815 0.2500 7.75e-06 5y9d:B
78 8hk0:C 346 115 0.0895 0.0983 0.2957 7.26e-05 8hk0:D
79 5k3i:A 661 189 0.1289 0.0741 0.2593 0.003 5k3i:B, 5k3i:C, 5k3i:D, 5k3i:E, 5k3i:F, 5k3i:G, 5k3i:H
80 5ltm:B 537 118 0.0789 0.0559 0.2542 0.24 5ltm:A
81 5k3j:A 662 196 0.1158 0.0665 0.2245 2.0 5k3j:B
82 2rfq:A 388 275 0.1447 0.1418 0.2000 3.1 2rfq:B, 2rfq:C, 2rfq:D
83 5do8:B 553 77 0.0579 0.0398 0.2857 3.9 5do8:A, 5do8:C
84 8ayh:B 951 118 0.0842 0.0336 0.2712 5.3 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
85 8y9p:A 195 23 0.0289 0.0564 0.4783 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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