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BioLiP
>protein
MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSELKRS
HHHHH

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bph:A 85 85 1.0000 1.0000 1.0000 5.54e-58
2 7r49:H 77 77 0.4000 0.4416 0.4416 9.66e-13
3 7ar7:T 84 55 0.2353 0.2381 0.3636 0.002 7ar8:T, 8bq6:T
4 7f2r:B 79 44 0.1882 0.2025 0.3636 0.010
5 6jdk:B 516 49 0.2471 0.0407 0.4286 0.075 6jdk:A
6 8jfh:E 79 55 0.2000 0.2152 0.3091 0.078 8jfn:B
7 2qnw:A 80 51 0.1882 0.2000 0.3137 0.079
8 2eht:A 77 74 0.2471 0.2727 0.2838 0.13
9 7zmb:Q 85 28 0.1529 0.1529 0.4643 0.29 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
10 2koo:A 81 32 0.1647 0.1728 0.4375 0.34 2kop:A, 2koq:A, 2kor:A, 2kos:A
11 2fac:A 77 27 0.1412 0.1558 0.4444 0.43 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
12 7arc:U 84 28 0.1529 0.1548 0.4643 0.59 7ard:U
13 7ak6:U 88 45 0.1647 0.1591 0.3111 0.67 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
14 6nr7:A 1086 68 0.2118 0.0166 0.2647 1.1 4dj9:A, 4e17:A, 6fq4:A, 2gdc:A, 2gww:A, 2hsq:A, 2ibf:A, 5l0c:B, 5l0c:C, 5l0c:D, 5l0d:B, 5l0d:D, 5l0g:B, 5l0g:C, 5l0h:A, 4pr9:D, 4pr9:E, 4pr9:F, 3rf3:A, 3rf3:B, 1rkc:A, 3s90:A, 3s90:B, 1syq:A, 1t01:A, 3tj5:A, 3tj6:A, 1u6h:A, 1xwj:A, 1ydi:A, 3zdl:A, 1zvz:A, 1zw2:A, 1zw3:A
15 8e73:AB 85 62 0.2118 0.2118 0.2903 1.4
16 4qez:B 231 26 0.1412 0.0519 0.4615 1.7 4qez:A, 4qez:C
17 8bee:U 87 55 0.2000 0.1954 0.3091 2.0 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
18 8w1o:K 1290 23 0.1176 0.0078 0.4348 3.4
19 4y9t:A 321 28 0.0941 0.0249 0.2857 4.2 5br1:A
20 7cj5:A 292 29 0.1059 0.0308 0.3103 4.4 7cj4:A, 7cj4:B, 7cj5:B, 7cj6:A, 7cj6:B, 7cj7:A, 7cj7:B, 7cj8:A, 7cj8:B, 7cj8:C, 7cj8:D, 7cj8:E, 7cj8:F, 7cj9:A, 7cj9:B, 7cj9:C, 7cj9:D, 7cj9:E, 7cj9:F, 7cj9:G, 7cj9:H
21 6z81:A 342 12 0.0941 0.0234 0.6667 4.5 4wq4:A, 4wq4:B, 4wq5:A, 4wq5:B, 4ydu:A, 4ydu:B, 6z81:B, 3zet:B, 3zeu:B, 3zeu:E
22 6u1h:D 305 16 0.0941 0.0262 0.5000 4.6 6u1i:A
23 6u1d:B 326 16 0.0941 0.0245 0.5000 4.7 6u1d:A, 6u1e:A, 6u1e:B, 6u1f:A, 6u1f:B, 6u1g:A, 6u1g:B, 6u1h:A, 6u1h:B, 6u1h:C, 6u1i:C, 6u1j:A, 6u1j:C, 6u1k:A, 6u1k:B, 6u1k:C, 6u1k:D, 2yzm:A, 2yzm:B, 2yzm:C, 2yzn:A, 2yzn:B, 2yzn:C, 2zdg:A, 2zdg:B, 2zdg:C, 2zdg:D, 2zdh:A, 2zdh:B, 2zdh:C, 2zdh:D, 2zdq:A, 2zdq:B
24 7b0n:U 88 42 0.1647 0.1591 0.3333 7.7 6rfq:Q, 6rfr:Q, 6y79:Q
25 8hkj:G 401 41 0.1412 0.0299 0.2927 8.2 8hkj:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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