Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIH
VEPEGERKR

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3byr:A 89 89 1.0000 1.0000 1.0000 4.64e-59
2 2qfi:A 286 85 0.3258 0.1014 0.3412 2.22e-12 3h90:A, 3h90:B, 3h90:C, 3h90:D, 2qfi:B
3 8f6k:B 287 83 0.3034 0.0941 0.3253 2.56e-08 8f6e:A, 8f6e:B, 8f6f:A, 8f6f:B, 8f6h:A, 8f6h:B, 8f6i:B, 8f6i:A, 8f6j:B, 8f6j:A, 8f6k:A, 8f6k:C, 8f6k:D, 7kzz:B, 7kzz:A, 5vrf:B, 5vrf:A
4 6vda:A 86 59 0.2135 0.2209 0.3220 6.82e-05
5 6ato:A 221 72 0.2247 0.0905 0.2778 0.011 4acs:A, 4acs:B, 4acs:C, 4acs:D, 6ato:B, 6atr:A, 6atr:B, 7bib:A, 7bib:B, 1gse:A, 1gse:B, 1gsf:A, 1gsf:B, 1gsf:C, 1gsf:D, 1guh:A, 1guh:B, 1guh:C, 1guh:D, 4hj2:A, 4hj2:B, 3i69:A, 3i69:B, 3i69:C, 3i69:D, 3i6a:A, 3i6a:B, 3i6a:C, 3i6a:D, 3i6a:E, 3i6a:F, 3i6a:G, 3i6a:H, 3ik9:A, 3ik9:B, 3ik9:C, 3ik9:D, 3ik9:E, 3ik9:F, 3ik9:G, 3ik9:H, 5jcu:A, 5jcu:B, 5jcu:C, 5jcu:D, 1k3l:A, 1k3l:B, 1k3y:A, 1k3y:B, 3ktl:A, 3ktl:B, 3l0h:A, 3l0h:B, 1pkw:A, 1pkw:B, 1pl1:A, 1pl1:B, 1pl2:A, 1pl2:B, 2r3x:A, 2r3x:B, 2r6k:A, 2r6k:B, 1tdi:A, 1tdi:B, 1usb:A, 1usb:B, 2vct:A, 2vct:B, 2vct:C, 2vct:D, 2vcv:A, 2vcv:B, 2vcv:C, 2vcv:D, 2vcv:E, 2vcv:F, 2vcv:G, 2vcv:H, 2vcv:I, 2vcv:J, 2vcv:K, 2vcv:L, 2vcv:M, 2vcv:N, 2vcv:O, 2vcv:P, 2wju:A, 2wju:B, 2wju:C, 2wju:D, 2wju:E, 2wju:F, 2wju:G, 2wju:H, 6yaw:A, 6yaw:B, 1ydk:A, 1ydk:B
6 8any:A5 581 78 0.2584 0.0396 0.2949 0.22
7 6h5k:A 91 67 0.2022 0.1978 0.2687 1.7 6g55:A, 6h5m:A, 6h5u:B, 6h5u:A, 6h5u:C, 6h87:A, 5hsp:A
8 1l1y:A 642 41 0.1461 0.0202 0.3171 2.6 1l1y:B, 1l1y:C, 1l1y:D, 1l1y:E, 1l1y:F, 1l2a:A, 1l2a:B, 1l2a:C, 1l2a:D, 1l2a:E, 1l2a:F, 5yj6:A
9 3f21:A 67 29 0.1236 0.1642 0.3793 2.7 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
10 6zj9:A 220 72 0.2135 0.0864 0.2639 4.7 6zjc:B, 6zjc:A, 6zjc:D, 6zjc:C
11 1kv9:A 664 19 0.1011 0.0136 0.4737 6.2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218