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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDEFEMIKRNTSEIISEEELREVLKKDEKSARIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIIYLADLGAYLNQKGELD
EIRKIGDYNKKVFEAMGLKAKYVYGSENCLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNNIH
YSGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNP
IMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRL

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4nx2:A 313 306 0.9771 0.9553 0.9771 0.0 2ag6:A, 7ckg:B, 3d6u:A, 3d6v:A, 2hgz:A, 4hjx:A, 4hjx:B, 4hpw:A, 1j1u:A, 5l7p:B, 3n2y:A, 3n2y:B, 5n5u:A, 4nda:A, 5nsf:B, 5nsf:A, 5nsf:C, 5nsf:D, 4pbr:A, 4pbs:A, 4pbt:A, 2pxh:A, 3qe4:A, 3qe4:B, 6wrk:A, 6wrn:A, 6wrq:A, 6wrt:A, 7ynw:A, 7ynw:B, 1zh0:A, 1zh6:A, 2zp1:A
2 2cyb:A 319 317 0.5654 0.5423 0.5457 4.26e-117 2cyb:B
3 2cyc:A 371 347 0.4346 0.3585 0.3833 5.83e-60 2cyc:B
4 7sc6:A 349 328 0.3791 0.3324 0.3537 2.34e-52 7scq:A, 7scq:B
5 2dlc:X 339 330 0.3399 0.3068 0.3152 9.20e-50
6 7rou:A 335 322 0.3660 0.3343 0.3478 2.02e-49 1q11:A, 4q93:A, 4qbt:A, 5thh:A
7 7ror:B 362 318 0.3693 0.3122 0.3553 6.89e-49 7ror:A, 7ros:A, 7ros:B, 7rot:A, 7rot:B, 3vgj:A, 3vgj:B
8 5usf:A 682 337 0.3203 0.1437 0.2908 8.13e-33 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B
9 5usf:A 682 250 0.2288 0.1026 0.2800 3.55e-10 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B
10 3p0j:A 657 340 0.3268 0.1522 0.2941 3.58e-31 3p0h:B, 3p0i:B, 3p0j:B
11 3p0j:A 657 195 0.1863 0.0868 0.2923 6.71e-11 3p0h:B, 3p0i:B, 3p0j:B
12 2j5b:A 321 316 0.3007 0.2866 0.2911 1.50e-23 2j5b:B
13 1h3f:B 406 261 0.2255 0.1700 0.2644 3.16e-15 1h3f:A
14 1h3e:A 427 258 0.2255 0.1616 0.2674 8.78e-14
15 6bqz:A 215 209 0.1765 0.2512 0.2584 2.35e-12 6bqz:B
16 2a4m:C 331 299 0.2451 0.2266 0.2508 1.99e-11 1yi8:C, 1yia:B, 1yid:B
17 6ncr:A 342 310 0.2451 0.2193 0.2419 1.21e-09 6ncr:B
18 3a04:A 367 236 0.2124 0.1771 0.2754 1.69e-08 3a05:A
19 2g36:A 322 224 0.1797 0.1708 0.2455 3.62e-07
20 4j75:A 374 242 0.2157 0.1765 0.2727 9.76e-07 4j75:B, 4jfa:A, 4jfa:B, 4jfa:D
21 2yy5:B 346 325 0.2484 0.2197 0.2338 4.40e-06 2yy5:A, 2yy5:C, 2yy5:D
22 5ekd:A 327 233 0.1961 0.1835 0.2575 8.33e-05 5ekd:B
23 4jfa:C 348 229 0.1863 0.1638 0.2489 1.15e-04
24 3jxe:B 363 203 0.1536 0.1295 0.2315 2.52e-04 3jxe:A
25 3tzl:B 320 244 0.1895 0.1812 0.2377 0.003 3tzl:A
26 3ct4:A 318 45 0.0523 0.0503 0.3556 1.3 3ct4:B, 3ct4:C
27 6tm0:A 811 65 0.0588 0.0222 0.2769 2.1 6tlz:A, 6tlz:B, 6tm0:B
28 8i1w:B 333 219 0.1438 0.1321 0.2009 2.5 8i1y:A, 8i1y:B, 8i1z:A, 8i1z:B, 8i27:A, 8i27:B, 8i2a:B, 8i2a:A, 8i2c:A, 8i2c:B, 8i2j:A, 8i2j:B, 8i2l:B, 8i2l:A, 8i2m:A, 8i2m:B, 8i4i:A, 8i4i:B, 5v0i:A, 5v0i:B
29 3ziu:A 621 80 0.0752 0.0370 0.2875 2.6 3ziu:B
30 4nv0:B 300 55 0.0654 0.0667 0.3636 3.5 4nv0:A, 4nwi:A, 4nwi:B
31 4v6w:Ch 123 31 0.0392 0.0976 0.3871 3.8 6xu6:Ch, 6xu7:Ch, 6xu8:Ch
32 5ko7:B 200 77 0.0654 0.1000 0.2597 6.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218