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BioLiP
>protein
MDEEREKLKEKLKEVLRRAKEAKKKGDKEKLIELAYEAAALAAWIIHKDSNDDEIVELAKEALKLVLEAAKEAKKNGDKE
KLIKLAYLAAAVAAWIIHTDGDDDEIVELAKEALKLVLEAAKEAKKNGDKEKLIKLAYLAAAVAAWIITTDGDDDEIVEL
AKEALKLVLEAAKEAKKNGDKEKLIKLAYLAAAVAAWIIHTDGDDDEIVELAKEALKLVLEAAKEAKKNGDKEKLIKLAY
LAAAVAAWIITTDGDDEEIVELAKEALKLVKEAAEEAEKQGDEELREKLRYLSEAVREWIERND

The query sequence (length=304) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ue2:A 304 304 1.0000 1.0000 1.0000 0.0
2 6n4n:F 191 145 0.1579 0.2513 0.3310 3.46e-09 6n4n:C
3 6n4n:F 191 143 0.1579 0.2513 0.3357 5.92e-09 6n4n:C
4 6n4n:F 191 139 0.1579 0.2513 0.3453 9.86e-08 6n4n:C
5 6n4n:F 191 88 0.0888 0.1414 0.3068 7.7 6n4n:C
6 7udm:B 281 234 0.2467 0.2669 0.3205 2.50e-06 7udl:A, 7udm:A
7 7udm:B 281 226 0.2500 0.2705 0.3363 1.13e-05 7udl:A, 7udm:A
8 7udm:B 281 193 0.2007 0.2171 0.3161 2.17e-04 7udl:A, 7udm:A
9 7unj:A 218 224 0.2270 0.3165 0.3080 1.39e-04 7unj:B
10 7unj:A 218 156 0.1579 0.2202 0.3077 2.02e-04 7unj:B
11 7udk:A 172 185 0.1875 0.3314 0.3081 0.007
12 7uni:B 245 202 0.2138 0.2653 0.3218 0.007 7uni:A, 7uni:C, 7uni:D
13 8fit:A 229 209 0.2434 0.3231 0.3541 0.17 8fit:C
14 8fit:A 229 66 0.0987 0.1310 0.4545 0.51 8fit:C
15 8fit:A 229 206 0.2368 0.3144 0.3495 7.6 8fit:C
16 8cnr:A 548 115 0.1151 0.0639 0.3043 0.68 8cns:A
17 8cnr:A 548 115 0.1184 0.0657 0.3130 6.1 8cns:A
18 6axe:A 729 46 0.0559 0.0233 0.3696 1.5 6axe:B
19 8fiq:A 172 84 0.0921 0.1628 0.3333 2.0
20 8fiq:A 172 91 0.1020 0.1802 0.3407 8.3
21 7n3m:AAA 437 40 0.0428 0.0297 0.3250 7.6 4enh:A, 4fia:A, 4j14:A, 7lrl:A, 7ls3:A, 7ls4:A, 3mdm:A, 3mdr:A, 3mdr:B, 3mdt:A, 3mdt:B, 3mdv:A, 3mdv:B, 7n3l:A, 7n6f:A, 2q9f:A, 2q9g:A
22 4blt:A 305 65 0.0691 0.0689 0.3231 8.8 4blr:A, 4blr:B, 4blr:C, 4bls:A, 4bls:B, 4bls:C, 4blt:B, 4blt:C, 2vhc:A, 2vhc:C, 2vhc:B, 2vhj:A, 2vhj:B, 2vhj:C, 2vhq:A, 2vhq:B, 2vhq:C, 2vht:A, 2vht:B, 2vht:C, 2vhu:A, 2vhu:B, 2vhu:C, 1w44:A, 1w44:B, 1w44:C, 1w46:A, 1w46:B, 1w46:C, 1w47:A, 1w47:B, 1w47:C, 1w48:A, 1w48:B, 1w48:C, 1w49:A, 1w49:B, 1w49:C, 1w4a:A, 1w4a:B, 1w4a:C, 1w4b:A, 1w4b:B, 1w4b:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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